Variant report

Variant	rs629959
Chromosome Location	chr10:89968910-89968911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89964521..89966509-chr10:89967760..89970508,2	K562	blood:
2	chr10:89968668..89970425-chr10:90144988..90146828,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1147648	0.81[EUR][1000 genomes]
rs1943987	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485396	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs508901	0.82[EUR][1000 genomes]
rs533722	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs535541	0.81[EUR][1000 genomes]
rs537546	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs543338	0.89[CHB][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs551265	0.84[CHB][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs567645	0.81[EUR][1000 genomes]
rs645516	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs647730	0.84[CHB][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895878	chr10:89959082-90006507	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
2	chr10:89964400-89969000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:89966000-89969000	Weak transcription	Psoas Muscle	Psoas
4	chr10:89966000-89969000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:89966200-89969600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:89966200-89970200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:89966400-89969200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:89966400-89973000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:89966600-89969400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:89966600-89969600	Weak transcription	Fetal Lung	lung
11	chr10:89966800-89969400	Weak transcription	GM12878-XiMat	blood
12	chr10:89967800-89978200	Weak transcription	Pancreas	Pancrea
13	chr10:89968000-89969000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:89968000-89972400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:89968200-89969200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:89968200-89969600	Weak transcription	Placenta	Placenta
17	chr10:89968400-89969200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr10:89968600-89969800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:89968600-89969800	Enhancers	HMEC	breast
20	chr10:89968800-89970200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:89968800-89974800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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