Variant report

Variant	rs1147783
Chromosome Location	chr9:13353695-13353696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10119585	0.95[ASN][1000 genomes]
rs1038979	0.81[AMR][1000 genomes]
rs10809941	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1147779	0.95[ASN][1000 genomes]
rs1147782	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1157428	0.92[ASN][1000 genomes]
rs1169238	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1184560	0.89[ASN][1000 genomes]
rs1186041	0.90[ASN][1000 genomes]
rs12347696	0.97[ASN][1000 genomes]
rs1330143	0.97[ASN][1000 genomes]
rs7034240	0.90[ASN][1000 genomes]
rs713498	0.96[ASN][1000 genomes]
rs725741	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752281	chr9:13284600-13405072	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13351800-13354600	Weak transcription	Osteobl	bone
2	chr9:13351800-13354800	Weak transcription	NHDF-Ad	bronchial
3	chr9:13352800-13358200	Weak transcription	Fetal Lung	lung
4	chr9:13353000-13357400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:13353200-13358000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:13353600-13358200	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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