Variant report

Variant	rs1184560
Chromosome Location	chr9:13358807-13358808
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10119585	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1023192	0.88[CEU][hapmap]
rs10738332	0.83[EUR][1000 genomes]
rs10809937	0.83[EUR][1000 genomes]
rs1147779	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1147782	0.90[ASN][1000 genomes]
rs1147783	0.89[ASN][1000 genomes]
rs1157428	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1169238	0.92[ASN][1000 genomes]
rs1186041	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12347696	0.92[ASN][1000 genomes]
rs1330143	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2642451	0.91[EUR][1000 genomes]
rs2841172	0.87[EUR][1000 genomes]
rs7034240	0.97[ASN][1000 genomes]
rs713498	0.94[ASN][1000 genomes]
rs725741	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752281	chr9:13284600-13405072	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13357200-13359200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:13357400-13359000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:13357600-13359000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:13357600-13359000	Enhancers	Fetal Stomach	stomach
5	chr9:13357600-13359000	Enhancers	NH-A	brain
6	chr9:13357800-13359000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:13357800-13359000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:13358000-13360000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:13358400-13361600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:13358600-13361400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:13358600-13365600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:13358600-13369000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:13358800-13360400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:13358800-13360800	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:13358800-13361800	Weak transcription	Osteobl	bone
16	chr9:13358800-13364200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:13358800-13369000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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