Variant report

Variant	rs725741
Chromosome Location	chr9:13356342-13356343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10119585	0.92[ASN][1000 genomes]
rs1038979	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs10756461	1.00[YRI][hapmap]
rs10809920	1.00[YRI][hapmap]
rs10809941	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1147779	0.92[ASN][1000 genomes]
rs1147782	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1147783	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1157428	0.94[ASN][1000 genomes]
rs1169238	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1184560	0.92[ASN][1000 genomes]
rs1186041	0.92[ASN][1000 genomes]
rs12347696	0.92[ASN][1000 genomes]
rs1330129	1.00[YRI][hapmap]
rs1330143	0.92[ASN][1000 genomes]
rs7034240	0.92[ASN][1000 genomes]
rs713498	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752281	chr9:13284600-13405072	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13352800-13358200	Weak transcription	Fetal Lung	lung
2	chr9:13353000-13357400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:13353200-13358000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:13353600-13358200	Weak transcription	Fetal Brain Male	brain
5	chr9:13355000-13357600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:13355000-13357600	Weak transcription	Osteobl	bone
7	chr9:13355000-13358000	Weak transcription	NHDF-Ad	bronchial
8	chr9:13355000-13358400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:13355200-13357600	Weak transcription	NH-A	brain
10	chr9:13355200-13357800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:13356000-13357200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links