Variant report

Variant	rs11488749
Chromosome Location	chr10:97014773-97014774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97009240..97011138-chr10:97013509..97015080,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11596737	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11596853	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12776258	0.94[ASN][1000 genomes]
rs1887182	0.91[ASN][1000 genomes]
rs4917683	0.85[ASN][1000 genomes]
rs7089314	0.85[ASN][1000 genomes]
rs900786	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96991000-97020400	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:96991000-97024000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:96991400-97019000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:96996400-97016000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:96998400-97030200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:97000400-97024400	Weak transcription	Fetal Kidney	kidney
7	chr10:97006200-97017600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:97006400-97019600	Weak transcription	K562	blood
9	chr10:97007000-97026400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr10:97007600-97020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:97007800-97020800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:97008000-97016000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:97008000-97016200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:97008000-97016600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:97008000-97019400	Weak transcription	Placenta	Placenta
16	chr10:97008000-97020200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:97008200-97017800	Weak transcription	Osteobl	bone
18	chr10:97008600-97016200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:97008600-97016200	Weak transcription	NH-A	brain
20	chr10:97008600-97019800	Weak transcription	HSMM	muscle
21	chr10:97008800-97016200	Weak transcription	HSMMtube	muscle
22	chr10:97008800-97019800	Weak transcription	Fetal Thymus	thymus
23	chr10:97009000-97019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:97009000-97020400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:97009200-97019600	Weak transcription	Esophagus	oesophagus
26	chr10:97009200-97020200	Weak transcription	Pancreas	Pancrea
27	chr10:97009200-97020600	Weak transcription	Fetal Lung	lung
28	chr10:97009200-97028200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:97009600-97015800	Weak transcription	NHDF-Ad	bronchial
30	chr10:97009600-97016000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:97009600-97019600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr10:97009800-97016000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:97009800-97016000	Weak transcription	Liver	Liver
34	chr10:97009800-97019200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr10:97009800-97019200	Weak transcription	Small Intestine	intestine
36	chr10:97009800-97019200	Weak transcription	Spleen	Spleen
37	chr10:97009800-97020000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:97009800-97020000	Weak transcription	Fetal Heart	heart
39	chr10:97009800-97020400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:97009800-97020800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:97010000-97017600	Weak transcription	NHLF	lung
42	chr10:97010400-97016400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:97010600-97016200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:97010800-97017400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr10:97011000-97016200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:97011200-97016400	Weak transcription	HMEC	breast
47	chr10:97011400-97016200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:97011600-97019200	Weak transcription	Aorta	Aorta
49	chr10:97012000-97014800	Enhancers	HUVEC	blood vessel
50	chr10:97012000-97016000	Weak transcription	A549	lung

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