Variant report

Variant	rs12776258
Chromosome Location	chr10:97011407-97011408
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97004348..97006901-chr10:97009361..97013623,3	MCF-7	breast:
2	chr10:97003038..97005827-chr10:97009513..97011595,2	K562	blood:
3	chr10:97010783..97013765-chr10:97019245..97021501,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10882572	0.88[CHB][hapmap]
rs11488749	0.94[ASN][1000 genomes]
rs11596737	0.88[CHB][hapmap]
rs11596853	0.88[CHB][hapmap]
rs12413028	0.88[CHB][hapmap]
rs12415795	0.88[CHB][hapmap]
rs1887182	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2296961	0.86[JPT][hapmap]
rs4917683	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7089314	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs900786	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96991000-97020400	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:96991000-97024000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:96991400-97019000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:96996400-97016000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:96998400-97030200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:97000400-97024400	Weak transcription	Fetal Kidney	kidney
7	chr10:97005600-97011800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:97006200-97017600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:97006400-97019600	Weak transcription	K562	blood
10	chr10:97007000-97026400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:97007200-97012200	Strong transcription	Fetal Stomach	stomach
12	chr10:97007200-97013000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr10:97007600-97014000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:97007600-97020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:97007800-97012200	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr10:97007800-97012200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:97007800-97020800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:97008000-97016000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:97008000-97016200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:97008000-97016600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:97008000-97019400	Weak transcription	Placenta	Placenta
22	chr10:97008000-97020200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:97008200-97011600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:97008200-97012800	Weak transcription	Stomach Mucosa	stomach
25	chr10:97008200-97017800	Weak transcription	Osteobl	bone
26	chr10:97008600-97016200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:97008600-97016200	Weak transcription	NH-A	brain
28	chr10:97008600-97019800	Weak transcription	HSMM	muscle
29	chr10:97008800-97016200	Weak transcription	HSMMtube	muscle
30	chr10:97008800-97019800	Weak transcription	Fetal Thymus	thymus
31	chr10:97009000-97011800	Weak transcription	Primary B cells from cord blood	blood
32	chr10:97009000-97013400	Strong transcription	HepG2	liver
33	chr10:97009000-97019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:97009000-97020400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:97009200-97019600	Weak transcription	Esophagus	oesophagus
36	chr10:97009200-97020200	Weak transcription	Pancreas	Pancrea
37	chr10:97009200-97020600	Weak transcription	Fetal Lung	lung
38	chr10:97009200-97028200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:97009600-97012400	Strong transcription	NHEK	skin
40	chr10:97009600-97015800	Weak transcription	NHDF-Ad	bronchial
41	chr10:97009600-97016000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:97009600-97019600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr10:97009800-97012000	Weak transcription	HUVEC	blood vessel
44	chr10:97009800-97012200	Strong transcription	Duodenum Mucosa	Duodenum
45	chr10:97009800-97012400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:97009800-97013200	Strong transcription	GM12878-XiMat	blood
47	chr10:97009800-97013600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:97009800-97016000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr10:97009800-97016000	Weak transcription	Liver	Liver
50	chr10:97009800-97019200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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