Variant report

Variant	rs7089314
Chromosome Location	chr10:97036020-97036021
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:97035342-97036558	SK-N-SH	brain:	n/a	chr10:97035710-97035722
2	POLR2A	chr10:97035994-97036488	GM12892	blood:	n/a	n/a
3	WRNIP1	chr10:97036005-97036060	GM12878	blood:	n/a	n/a
4	MAFK	chr10:97035955-97036052	HepG2	liver:	n/a	n/a
5	CEBPB	chr10:97035587-97036074	IMR90	lung:	n/a	n/a
6	GATA3	chr10:97035347-97036088	SK-N-SH	brain:	n/a	chr10:97035710-97035722
7	JUN	chr10:97035767-97036027	HepG2	liver:	n/a	chr10:97035899-97035912 chr10:97035865-97035878

No.	Distal block	Cell Line	Cell type
1	chr10:97030116..97038568-chr10:97046190..97052064,12	MCF-7	breast:
2	chr10:97031784..97034923-chr10:97035763..97037626,3	MCF-7	breast:
3	chr10:97035976..97040217-chr10:97047732..97050873,5	K562	blood:
4	chr10:97034466..97036166-chr10:97046747..97048932,2	K562	blood:
5	chr10:97036003..97038963-chr10:97049234..97050879,2	MCF-7	breast:
6	chr10:97035457..97038031-chr10:97038055..97040397,3	MCF-7	breast:

Variant related genes	Relation type
PDLIM1	TF binding region
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10882572	0.88[CHB][hapmap]
rs11488749	0.85[ASN][1000 genomes]
rs11596737	0.88[CHB][hapmap]
rs11596853	0.88[CHB][hapmap]
rs12413028	0.88[CHB][hapmap]
rs12415795	0.88[CHB][hapmap]
rs12776258	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1887182	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs4917683	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs900786	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97021400-97036400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
3	chr10:97028600-97036200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:97028600-97036200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:97028600-97038200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97029000-97039200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:97030600-97036200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:97030600-97037800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:97030800-97036200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:97031000-97038200	Weak transcription	Fetal Stomach	stomach
11	chr10:97031600-97036200	Weak transcription	Primary B cells from cord blood	blood
12	chr10:97031600-97046600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr10:97032400-97040800	Enhancers	Stomach Mucosa	stomach
14	chr10:97032600-97036400	Enhancers	Liver	Liver
15	chr10:97032600-97041000	Enhancers	Fetal Intestine Large	intestine
16	chr10:97032600-97043600	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr10:97032800-97037600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:97032800-97039200	Enhancers	Duodenum Mucosa	Duodenum
19	chr10:97032800-97042800	Enhancers	Small Intestine	intestine
20	chr10:97033000-97038600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:97033000-97039800	Enhancers	K562	blood
22	chr10:97033400-97037000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:97033400-97037800	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr10:97033400-97039000	Enhancers	Left Ventricle	heart
25	chr10:97033400-97039400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr10:97033600-97037800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:97033600-97037800	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:97033600-97040000	Enhancers	Adipose Nuclei	Adipose
29	chr10:97033800-97037600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:97033800-97038000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:97033800-97039800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:97033800-97041600	Enhancers	NHLF	lung
33	chr10:97033800-97042400	Enhancers	Osteobl	bone
34	chr10:97034000-97036200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:97034000-97036200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:97034000-97036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:97034000-97036800	Weak transcription	Aorta	Aorta
38	chr10:97034000-97037600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:97034000-97037600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:97034000-97040600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:97034000-97042000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:97034000-97042400	Enhancers	NHDF-Ad	bronchial
43	chr10:97034000-97045000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr10:97034000-97046400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:97034200-97038200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr10:97034400-97036200	Genic enhancers	A549	lung
47	chr10:97034600-97036400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:97035000-97036400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:97035000-97036600	Enhancers	Muscle Satellite Cultured Cells	--
50	chr10:97035000-97036600	Enhancers	NH-A	brain

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