Variant report

Variant	rs1149650
Chromosome Location	chr1:56668163-56668164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10789015	1.00[EUR][1000 genomes]
rs1230035	1.00[EUR][1000 genomes]
rs2793692	1.00[EUR][1000 genomes]
rs6684895	1.00[EUR][1000 genomes]
rs697582	1.00[EUR][1000 genomes]
rs706372	1.00[EUR][1000 genomes]
rs706373	1.00[EUR][1000 genomes]
rs706374	1.00[EUR][1000 genomes]
rs706380	1.00[EUR][1000 genomes]
rs706382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706390	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706393	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706394	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs778123	1.00[EUR][1000 genomes]
rs778389	1.00[EUR][1000 genomes]
rs778414	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs778420	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs778422	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs778424	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653800-56669400	Enhancers	Placenta	Placenta
2	chr1:56662200-56668600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:56663200-56670000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:56664400-56669200	Weak transcription	Right Ventricle	heart
5	chr1:56665600-56668800	Enhancers	NHDF-Ad	bronchial
6	chr1:56665600-56669000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:56666200-56668400	Weak transcription	Dnd41	blood
8	chr1:56666400-56668400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:56666400-56672200	Weak transcription	Left Ventricle	heart
10	chr1:56666800-56668200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:56666800-56668200	Enhancers	Psoas Muscle	Psoas
12	chr1:56666800-56669200	Weak transcription	Fetal Lung	lung
13	chr1:56667200-56668400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:56667600-56671600	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:56667800-56668600	Enhancers	Fetal Stomach	stomach
16	chr1:56667800-56668800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links