Variant report

Variant	rs706382
Chromosome Location	chr1:56668577-56668578
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10789015	1.00[EUR][1000 genomes]
rs1149650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1230035	1.00[EUR][1000 genomes]
rs2793692	1.00[EUR][1000 genomes]
rs6684895	1.00[EUR][1000 genomes]
rs697582	1.00[EUR][1000 genomes]
rs706372	1.00[EUR][1000 genomes]
rs706373	1.00[EUR][1000 genomes]
rs706374	1.00[EUR][1000 genomes]
rs706380	1.00[EUR][1000 genomes]
rs706390	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706393	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706394	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs778123	1.00[EUR][1000 genomes]
rs778389	1.00[EUR][1000 genomes]
rs778414	1.00[EUR][1000 genomes]
rs778420	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs778422	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs778424	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653800-56669400	Enhancers	Placenta	Placenta
2	chr1:56662200-56668600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:56663200-56670000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:56664400-56669200	Weak transcription	Right Ventricle	heart
5	chr1:56665600-56668800	Enhancers	NHDF-Ad	bronchial
6	chr1:56665600-56669000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:56666400-56672200	Weak transcription	Left Ventricle	heart
8	chr1:56666800-56669200	Weak transcription	Fetal Lung	lung
9	chr1:56667600-56671600	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:56667800-56668600	Enhancers	Fetal Stomach	stomach
11	chr1:56667800-56668800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:56668200-56669200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:56668200-56678000	Weak transcription	Psoas Muscle	Psoas
14	chr1:56668400-56668600	Enhancers	Ovary	ovary
15	chr1:56668400-56668600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:56668400-56669200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:56668400-56670000	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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