Variant report

Variant	rs778414
Chromosome Location	chr1:56677381-56677382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10789015	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1149650	1.00[EUR][1000 genomes]
rs1230035	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2793692	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2793693	0.81[AMR][1000 genomes]
rs6684895	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs697582	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706372	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706373	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706374	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706380	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706382	1.00[EUR][1000 genomes]
rs706390	1.00[EUR][1000 genomes]
rs706393	1.00[EUR][1000 genomes]
rs7517069	0.81[AMR][1000 genomes]
rs778123	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs778389	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs778398	0.81[AMR][1000 genomes]
rs778424	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945964	chr1:56673295-56677420	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56668200-56678000	Weak transcription	Psoas Muscle	Psoas
2	chr1:56673800-56681400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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