Variant report

Variant	rs2793693
Chromosome Location	chr1:56714085-56714086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10789015	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1230035	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2000145	0.82[AFR][1000 genomes]
rs2793692	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6684895	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs697582	0.91[AMR][1000 genomes]
rs706362	0.85[AFR][1000 genomes]
rs706371	0.85[AFR][1000 genomes]
rs706372	0.91[AMR][1000 genomes]
rs706373	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs706374	0.91[AMR][1000 genomes]
rs706380	0.91[AMR][1000 genomes]
rs7517069	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs778123	1.00[AMR][1000 genomes]
rs778389	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs778395	0.85[AFR][1000 genomes]
rs778398	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs778414	0.81[AMR][1000 genomes]
rs809018	0.82[AFR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56702200-56721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56712400-56715400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:56712400-56715400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:56713200-56714600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:56713400-56714800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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