Variant report
| Variant | rs2000145 |
|---|---|
| Chromosome Location | chr1:56711763-56711764 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10789015 | 0.97[AFR][1000 genomes] |
| rs11206770 | 0.84[ASN][1000 genomes] |
| rs12021653 | 0.89[ASN][1000 genomes] |
| rs12023808 | 0.94[ASN][1000 genomes] |
| rs12024569 | 0.89[ASN][1000 genomes] |
| rs12025976 | 0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12026653 | 0.86[ASN][1000 genomes] |
| rs12026878 | 0.89[ASN][1000 genomes] |
| rs12027001 | 0.86[ASN][1000 genomes] |
| rs12027705 | 0.89[ASN][1000 genomes] |
| rs12035229 | 0.89[ASN][1000 genomes] |
| rs12035686 | 0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12035983 | 0.89[ASN][1000 genomes] |
| rs12036549 | 0.81[ASN][1000 genomes] |
| rs12038550 | 0.89[ASN][1000 genomes] |
| rs12039126 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12039490 | 0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12040943 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12041752 | 0.84[ASN][1000 genomes] |
| rs12042058 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12044098 | 0.81[ASN][1000 genomes] |
| rs12044174 | 0.92[ASN][1000 genomes] |
| rs12044228 | 0.81[ASN][1000 genomes] |
| rs12044711 | 0.84[ASN][1000 genomes] |
| rs12047559 | 0.89[ASN][1000 genomes] |
| rs12048642 | 0.89[ASN][1000 genomes] |
| rs12049444 | 0.84[ASN][1000 genomes] |
| rs1230035 | 0.92[AFR][1000 genomes] |
| rs2793692 | 0.94[AFR][1000 genomes] |
| rs2793693 | 0.82[AFR][1000 genomes] |
| rs6588611 | 0.88[ASN][1000 genomes] |
| rs6684895 | 0.97[AFR][1000 genomes] |
| rs697582 | 0.88[AFR][1000 genomes] |
| rs706372 | 0.91[AFR][1000 genomes] |
| rs706373 | 0.92[AFR][1000 genomes] |
| rs706374 | 0.89[AFR][1000 genomes] |
| rs706380 | 0.89[AFR][1000 genomes] |
| rs7517069 | 0.95[AFR][1000 genomes] |
| rs778123 | 0.91[AFR][1000 genomes] |
| rs778389 | 0.94[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:56695200-56721200 | Weak transcription | Psoas Muscle | Psoas |
| 2 | chr1:56702200-56721400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
