Variant report

Variant	rs12047559
Chromosome Location	chr1:56640708-56640709
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10888954	1.00[AMR][1000 genomes]
rs11206770	1.00[AMR][1000 genomes]
rs12021653	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12023471	1.00[AMR][1000 genomes]
rs12023808	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12024569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025257	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12025328	1.00[AMR][1000 genomes]
rs12025976	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12026025	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12026653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12026754	1.00[AMR][1000 genomes]
rs12026878	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027001	0.97[ASN][1000 genomes]
rs12027705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12031780	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12031810	1.00[AMR][1000 genomes]
rs12033449	1.00[AMR][1000 genomes]
rs12035229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12035632	1.00[AMR][1000 genomes]
rs12035686	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12035983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036549	0.92[ASN][1000 genomes]
rs12037566	1.00[AMR][1000 genomes]
rs12037900	0.83[ASN][1000 genomes]
rs12038550	1.00[ASN][1000 genomes]
rs12039126	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12039490	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12039731	1.00[AMR][1000 genomes]
rs12040943	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12041752	1.00[AMR][1000 genomes]
rs12042058	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12042311	0.89[ASN][1000 genomes]
rs12044098	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12044174	0.85[ASN][1000 genomes]
rs12044228	0.92[ASN][1000 genomes]
rs12045904	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12048642	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000145	0.89[ASN][1000 genomes]
rs6588611	0.98[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56637000-56646200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:56639200-56641200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:56639800-56641200	Enhancers	Osteobl	bone
4	chr1:56640200-56645800	Weak transcription	Small Intestine	intestine
5	chr1:56640200-56651200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:56640400-56645000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:56640400-56645400	Weak transcription	Psoas Muscle	Psoas
8	chr1:56640400-56645800	Weak transcription	NHLF	lung
9	chr1:56640400-56646000	Weak transcription	NHDF-Ad	bronchial
10	chr1:56640600-56640800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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