Variant report

Variant	rs12024569
Chromosome Location	chr1:56647051-56647052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10888954	1.00[AMR][1000 genomes]
rs11206770	1.00[AMR][1000 genomes]
rs12021653	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12023471	1.00[AMR][1000 genomes]
rs12023808	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12025257	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12025328	1.00[AMR][1000 genomes]
rs12025976	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12026025	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12026653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12026754	1.00[AMR][1000 genomes]
rs12026878	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027001	0.97[ASN][1000 genomes]
rs12027705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12031780	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12031810	1.00[AMR][1000 genomes]
rs12033449	1.00[AMR][1000 genomes]
rs12035229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12035632	1.00[AMR][1000 genomes]
rs12035686	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12035983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036549	0.92[ASN][1000 genomes]
rs12037566	1.00[AMR][1000 genomes]
rs12037900	0.83[ASN][1000 genomes]
rs12038550	1.00[ASN][1000 genomes]
rs12039126	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12039490	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12039731	1.00[AMR][1000 genomes]
rs12040943	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12041752	1.00[AMR][1000 genomes]
rs12042058	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12042311	0.89[ASN][1000 genomes]
rs12044098	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12044174	0.85[ASN][1000 genomes]
rs12044228	0.92[ASN][1000 genomes]
rs12045904	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12047559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12048642	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000145	0.89[ASN][1000 genomes]
rs6588611	0.98[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56640200-56651200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:56645000-56647800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:56645600-56647200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:56645600-56647200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:56645600-56647800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:56645600-56654000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:56645800-56651200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:56645800-56651400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:56646000-56647200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:56646000-56647200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:56646000-56647200	Enhancers	Fetal Stomach	stomach
12	chr1:56646000-56651200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:56646200-56647200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:56646200-56647200	Enhancers	Fetal Kidney	kidney
15	chr1:56646200-56647600	Enhancers	Fetal Lung	lung
16	chr1:56646200-56647800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr1:56646400-56647800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr1:56646800-56647200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:56646800-56647200	Enhancers	Primary T cells from cord blood	blood
20	chr1:56646800-56647200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:56646800-56647800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr1:56646800-56653800	Weak transcription	Fetal Muscle Leg	muscle
23	chr1:56647000-56647200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr1:56647000-56647200	Enhancers	Colon Smooth Muscle	Colon
25	chr1:56647000-56647200	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr1:56647000-56647200	Enhancers	Osteobl	bone
27	chr1:56647000-56647400	Enhancers	Adipose Nuclei	Adipose
28	chr1:56647000-56647400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr1:56647000-56647400	Enhancers	Right Atrium	heart
30	chr1:56647000-56647400	Enhancers	Dnd41	blood
31	chr1:56647000-56647400	Enhancers	HUVEC	blood vessel
32	chr1:56647000-56647600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr1:56647000-56647600	Enhancers	Liver	Liver
34	chr1:56647000-56647600	Enhancers	Rectal Smooth Muscle	rectum
35	chr1:56647000-56647600	Enhancers	HepG2	liver
36	chr1:56647000-56647600	Enhancers	NHDF-Ad	bronchial
37	chr1:56647000-56647800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:56647000-56655800	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links