Variant report
| Variant | rs11206770 |
|---|---|
| Chromosome Location | chr1:56745486-56745487 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10888954 | 1.00[AMR][1000 genomes] |
| rs12021653 | 1.00[AMR][1000 genomes] |
| rs12023471 | 1.00[AMR][1000 genomes] |
| rs12023808 | 1.00[AMR][1000 genomes] |
| rs12024569 | 1.00[AMR][1000 genomes] |
| rs12025257 | 1.00[AMR][1000 genomes] |
| rs12025328 | 1.00[AMR][1000 genomes] |
| rs12025976 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12026025 | 1.00[AMR][1000 genomes] |
| rs12026653 | 1.00[AMR][1000 genomes] |
| rs12026878 | 1.00[AMR][1000 genomes] |
| rs12027705 | 1.00[AMR][1000 genomes] |
| rs12031780 | 1.00[AMR][1000 genomes] |
| rs12035229 | 1.00[AMR][1000 genomes] |
| rs12035632 | 1.00[AMR][1000 genomes] |
| rs12035686 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12035983 | 1.00[AMR][1000 genomes] |
| rs12037566 | 1.00[AMR][1000 genomes] |
| rs12039126 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12039490 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12039731 | 1.00[AMR][1000 genomes] |
| rs12040943 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12041752 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12042058 | 1.00[AMR][1000 genomes] |
| rs12044098 | 1.00[AMR][1000 genomes] |
| rs12044174 | 1.00[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12044711 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12045904 | 1.00[AMR][1000 genomes] |
| rs12047559 | 1.00[AMR][1000 genomes] |
| rs12049444 | 1.00[ASN][1000 genomes] |
| rs2000145 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006422 | chr1:56734772-56828606 | Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv534972 | chr1:56734772-56828606 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:56745400-56757000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
