Variant report

Variant	rs12035686
Chromosome Location	chr1:56720364-56720365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56716406..56718859-chr1:56719242..56721929,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10888954	1.00[AMR][1000 genomes]
rs11206770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12021653	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12023471	1.00[AMR][1000 genomes]
rs12023808	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12024569	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12025257	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12025328	1.00[AMR][1000 genomes]
rs12025976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12026025	1.00[AMR][1000 genomes]
rs12026653	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12026754	1.00[AMR][1000 genomes]
rs12026878	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12027001	0.81[ASN][1000 genomes]
rs12027705	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12031780	1.00[AMR][1000 genomes]
rs12031810	1.00[AMR][1000 genomes]
rs12033449	1.00[AMR][1000 genomes]
rs12035229	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12035632	1.00[AMR][1000 genomes]
rs12035983	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12037566	1.00[AMR][1000 genomes]
rs12038550	0.85[ASN][1000 genomes]
rs12039126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12039490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12039731	1.00[AMR][1000 genomes]
rs12040943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12041752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12042058	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12044098	1.00[AMR][1000 genomes]
rs12044174	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12044711	0.89[ASN][1000 genomes]
rs12045904	1.00[AMR][1000 genomes]
rs12047559	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12048642	0.85[ASN][1000 genomes]
rs12049444	0.89[ASN][1000 genomes]
rs2000145	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6588611	0.83[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56702200-56721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56716600-56720800	Weak transcription	Adipose Nuclei	Adipose
4	chr1:56716600-56721000	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:56716800-56721400	Weak transcription	Left Ventricle	heart
6	chr1:56717000-56721200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr1:56717400-56720800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:56717400-56721400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:56717800-56720400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:56717800-56720800	Weak transcription	NHDF-Ad	bronchial
11	chr1:56718000-56720400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:56718400-56721200	Weak transcription	Aorta	Aorta
13	chr1:56720000-56724200	Enhancers	Placenta	Placenta
14	chr1:56720200-56721200	Weak transcription	Right Atrium	heart
15	chr1:56720200-56722000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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