The 2.0 version of rSNPBase

Variant report

Variant rs12039731
Chromosome Location chr1:56532567-56532568
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:25 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56518200-56540000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:56521400-56534600 Weak transcription Psoas Muscle Psoas
3 chr1:56526800-56533800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr1:56529200-56540400 Enhancers NHDF-Ad bronchial
5 chr1:56530200-56534600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr1:56530200-56535000 Weak transcription Fetal Muscle Leg muscle
7 chr1:56530800-56532800 Enhancers Placenta Placenta
8 chr1:56530800-56533800 Weak transcription Hela-S3 cervix
9 chr1:56531800-56532600 Enhancers Placenta Amnion Placenta Amnion
10 chr1:56531800-56534000 Weak transcription HMEC breast
11 chr1:56531800-56534000 Weak transcription NHEK skin
12 chr1:56531800-56534200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr1:56532000-56532600 Enhancers Aorta Aorta
14 chr1:56532000-56533000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr1:56532000-56533800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr1:56532000-56534000 Weak transcription Muscle Satellite Cultured Cells --
17 chr1:56532000-56534000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr1:56532000-56534000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:56532200-56533800 Weak transcription NHLF lung
20 chr1:56532200-56534000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr1:56532400-56533600 Weak transcription Osteobl bone
22 chr1:56532400-56533800 Weak transcription Ovary ovary
23 chr1:56532400-56533800 Weak transcription HSMM muscle
24 chr1:56532400-56534000 Weak transcription A549 lung
25 chr1:56532400-56534600 Weak transcription HSMMtube muscle

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Last update: Aug 31, 2015