Variant report

Variant	rs72910349
Chromosome Location	chr1:56569622-56569623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10888954	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206706	0.83[ASN][1000 genomes]
rs11206708	0.83[ASN][1000 genomes]
rs12022559	0.83[ASN][1000 genomes]
rs12023471	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024778	1.00[ASN][1000 genomes]
rs12025328	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026025	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12026754	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027471	0.83[ASN][1000 genomes]
rs12027507	0.83[ASN][1000 genomes]
rs12028993	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12031780	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12031810	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12033449	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12035632	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037566	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037900	0.88[ASN][1000 genomes]
rs12039145	0.83[ASN][1000 genomes]
rs12039731	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12040672	0.83[ASN][1000 genomes]
rs12042311	0.83[ASN][1000 genomes]
rs12042475	0.83[ASN][1000 genomes]
rs12044091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12044310	0.90[ASN][1000 genomes]
rs12044313	0.90[ASN][1000 genomes]
rs12045904	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12405362	0.83[ASN][1000 genomes]
rs12407240	0.83[ASN][1000 genomes]
rs1412211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1412212	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113315	0.82[AFR][1000 genomes]
rs2110030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56808525	0.82[AFR][1000 genomes]
rs6588606	0.82[AFR][1000 genomes]
rs72910313	0.81[AFR][1000 genomes]
rs72910332	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910334	0.82[AFR][1000 genomes]
rs72910352	0.84[AFR][1000 genomes]
rs72910355	0.84[AFR][1000 genomes]
rs7538626	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56565800-56571200	Weak transcription	Fetal Thymus	thymus
2	chr1:56568200-56569800	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links