Variant report

Variant	rs17113315
Chromosome Location	chr1:56561457-56561458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10158676	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489775	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489778	1.00[EUR][1000 genomes]
rs10489779	1.00[EUR][1000 genomes]
rs11206757	1.00[EUR][1000 genomes]
rs12044091	0.97[AFR][1000 genomes]
rs12164621	1.00[EUR][1000 genomes]
rs13376471	1.00[EUR][1000 genomes]
rs13376472	1.00[EUR][1000 genomes]
rs1412211	0.95[AFR][1000 genomes]
rs1412212	1.00[AFR][1000 genomes]
rs1412214	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113255	1.00[EUR][1000 genomes]
rs17113279	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113283	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113285	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113287	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113288	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113296	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113300	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113308	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113309	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2110030	0.97[AFR][1000 genomes]
rs56808525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60063936	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588579	1.00[EUR][1000 genomes]
rs6588605	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6588606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6668822	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677923	1.00[EUR][1000 genomes]
rs6689017	1.00[EUR][1000 genomes]
rs6701560	1.00[EUR][1000 genomes]
rs72904460	1.00[EUR][1000 genomes]
rs72904464	1.00[EUR][1000 genomes]
rs72904496	1.00[EUR][1000 genomes]
rs72904497	1.00[EUR][1000 genomes]
rs72904502	1.00[EUR][1000 genomes]
rs72906319	1.00[EUR][1000 genomes]
rs72910313	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910318	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910320	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910325	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910326	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910331	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910332	0.84[AFR][1000 genomes]
rs72910334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910348	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910349	0.82[AFR][1000 genomes]
rs72910352	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7538626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544577	1.00[EUR][1000 genomes]
rs881683	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9803707	1.00[EUR][1000 genomes]
rs9803781	1.00[EUR][1000 genomes]
rs9804038	1.00[EUR][1000 genomes]
rs9970331	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56558600-56562400	Enhancers	Fetal Thymus	thymus
2	chr1:56558600-56562600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:56558600-56563000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56558600-56568000	Enhancers	NHDF-Ad	bronchial
5	chr1:56560600-56562200	Enhancers	Dnd41	blood
6	chr1:56560800-56561600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56560800-56561600	Enhancers	Thymus	Thymus
8	chr1:56561000-56562400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:56561200-56561600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:56561200-56562600	Enhancers	Osteobl	bone
11	chr1:56561200-56562800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:56561400-56562200	Enhancers	Fetal Muscle Leg	muscle
13	chr1:56561400-56562600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:56561400-56562600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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