Variant report

Variant	rs12164621
Chromosome Location	chr1:56352516-56352517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10158676	1.00[EUR][1000 genomes]
rs10489775	1.00[EUR][1000 genomes]
rs10489778	1.00[EUR][1000 genomes]
rs10489779	1.00[EUR][1000 genomes]
rs13376471	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376472	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1412214	1.00[EUR][1000 genomes]
rs17112652	1.00[MEX][hapmap]
rs17112665	1.00[MEX][hapmap]
rs17112681	1.00[MEX][hapmap]
rs17113002	1.00[EUR][1000 genomes]
rs17113022	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17113255	1.00[EUR][1000 genomes]
rs17113279	1.00[EUR][1000 genomes]
rs17113283	1.00[EUR][1000 genomes]
rs17113285	1.00[EUR][1000 genomes]
rs17113287	1.00[EUR][1000 genomes]
rs17113288	1.00[EUR][1000 genomes]
rs17113296	1.00[EUR][1000 genomes]
rs17113300	1.00[EUR][1000 genomes]
rs17113308	1.00[EUR][1000 genomes]
rs17113309	1.00[EUR][1000 genomes]
rs17113315	1.00[EUR][1000 genomes]
rs4412634	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs60063936	1.00[EUR][1000 genomes]
rs6588579	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6668822	1.00[EUR][1000 genomes]
rs6677923	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689017	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701560	1.00[EUR][1000 genomes]
rs72904444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904460	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904464	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904496	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72904497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72904502	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72906319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72910313	1.00[EUR][1000 genomes]
rs72910318	1.00[EUR][1000 genomes]
rs72910320	1.00[EUR][1000 genomes]
rs72910325	1.00[EUR][1000 genomes]
rs72910326	1.00[EUR][1000 genomes]
rs72910331	1.00[EUR][1000 genomes]
rs72910334	1.00[EUR][1000 genomes]
rs74072545	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7538626	1.00[EUR][1000 genomes]
rs881683	1.00[EUR][1000 genomes]
rs9803707	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9803781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804038	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9970331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56346000-56354600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:56350400-56353000	Enhancers	NHDF-Ad	bronchial
3	chr1:56350800-56353800	Enhancers	Fetal Stomach	stomach
4	chr1:56352000-56353400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56352200-56353200	Enhancers	Fetal Brain Female	brain
6	chr1:56352400-56352600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:56352400-56353000	Enhancers	Fetal Brain Male	brain
8	chr1:56352400-56353200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:56352400-56353200	Enhancers	Fetal Lung	lung

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