Variant report

Variant	rs17112665
Chromosome Location	chr1:56171777-56171778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17112652	1.00[MEX][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112673	1.00[LWK][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112681	1.00[MEX][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3914411	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3936673	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4412634	1.00[MEX][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56166400-56182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:56167600-56174000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:56167800-56179000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56167800-56181000	Weak transcription	HSMM	muscle
5	chr1:56168000-56180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:56169800-56173200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:56169800-56177800	Weak transcription	Placenta	Placenta
8	chr1:56170200-56173000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:56170200-56173600	Weak transcription	Ovary	ovary
10	chr1:56170200-56173800	Weak transcription	Fetal Lung	lung
11	chr1:56170200-56177800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:56170200-56181000	Weak transcription	Fetal Muscle Leg	muscle
13	chr1:56170400-56172600	Weak transcription	NHLF	lung
14	chr1:56170400-56172800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:56170800-56172000	Weak transcription	NHDF-Ad	bronchial
16	chr1:56171600-56172200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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