Variant report

Variant	rs17112652
Chromosome Location	chr1:56168010-56168011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17112665	1.00[MEX][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112673	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112681	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3914411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3936673	1.00[ASW][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4412634	1.00[MEX][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56158400-56170800	Enhancers	NHDF-Ad	bronchial
2	chr1:56161400-56169400	Weak transcription	Placenta	Placenta
3	chr1:56162400-56169400	Weak transcription	Ovary	ovary
4	chr1:56164800-56169000	Weak transcription	Fetal Lung	lung
5	chr1:56166400-56169600	Weak transcription	HSMMtube	muscle
6	chr1:56166400-56182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:56166800-56169200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:56166800-56169200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:56166800-56169600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:56167000-56168800	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:56167000-56169200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:56167400-56169200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:56167600-56169200	Weak transcription	Fetal Stomach	stomach
14	chr1:56167600-56174000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:56167800-56169000	Weak transcription	NHLF	lung
16	chr1:56167800-56169200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:56167800-56179000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:56167800-56181000	Weak transcription	HSMM	muscle
19	chr1:56168000-56180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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