Variant report

Variant	rs3914411
Chromosome Location	chr1:56162947-56162948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56162766..56164524-chr1:57043600..57045392,2	MCF-7	breast:
2	chr1:56156698..56158897-chr1:56161662..56164222,3	K562	blood:

Variant related genes	Relation type
ENSG00000162407	Chromatin interaction

rs_ID	r²[population]
rs17112652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112665	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3936673	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56158400-56170800	Enhancers	NHDF-Ad	bronchial
2	chr1:56159200-56163800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:56159400-56163400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:56159600-56163000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56159600-56163000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:56159600-56164000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:56159600-56164000	Enhancers	NHLF	lung
8	chr1:56159600-56166800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:56159800-56163000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:56159800-56163400	Enhancers	Osteobl	bone
11	chr1:56159800-56164800	Enhancers	Fetal Lung	lung
12	chr1:56160000-56163000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:56160000-56163000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr1:56160000-56163000	Enhancers	NH-A	brain
15	chr1:56160600-56164000	Enhancers	Fetal Heart	heart
16	chr1:56161400-56165800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr1:56161400-56169400	Weak transcription	Placenta	Placenta
18	chr1:56161600-56165800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:56162000-56165000	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:56162200-56164000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:56162400-56166000	Weak transcription	HSMM	muscle
22	chr1:56162400-56169400	Weak transcription	Ovary	ovary
23	chr1:56162600-56166200	Weak transcription	HSMMtube	muscle
24	chr1:56162800-56163200	Weak transcription	Fetal Stomach	stomach
25	chr1:56162800-56165800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:56162800-56165800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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