Variant report

Variant	rs17113288
Chromosome Location	chr1:56499478-56499479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10158676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489775	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489778	1.00[EUR][1000 genomes]
rs10489779	1.00[EUR][1000 genomes]
rs11206757	1.00[EUR][1000 genomes]
rs12164621	1.00[EUR][1000 genomes]
rs13376471	1.00[EUR][1000 genomes]
rs13376472	1.00[EUR][1000 genomes]
rs1412214	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113002	1.00[EUR][1000 genomes]
rs17113022	1.00[EUR][1000 genomes]
rs17113255	1.00[EUR][1000 genomes]
rs17113279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113308	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113309	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113315	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56808525	0.87[AMR][1000 genomes]
rs60063936	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588579	1.00[EUR][1000 genomes]
rs6588606	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6668822	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677923	1.00[EUR][1000 genomes]
rs6689017	1.00[EUR][1000 genomes]
rs6701560	1.00[EUR][1000 genomes]
rs72904460	1.00[EUR][1000 genomes]
rs72904464	1.00[EUR][1000 genomes]
rs72904496	1.00[EUR][1000 genomes]
rs72904497	1.00[EUR][1000 genomes]
rs72904502	1.00[EUR][1000 genomes]
rs72906319	1.00[EUR][1000 genomes]
rs72910313	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910318	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910320	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910325	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910326	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910331	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910334	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910348	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910352	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910355	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74072545	1.00[EUR][1000 genomes]
rs7538626	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544577	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs881683	1.00[EUR][1000 genomes]
rs9803707	1.00[EUR][1000 genomes]
rs9803781	1.00[EUR][1000 genomes]
rs9804038	1.00[EUR][1000 genomes]
rs9970331	1.00[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56485200-56501800	Weak transcription	Aorta	Aorta
2	chr1:56492400-56506400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56495400-56500400	Weak transcription	Right Atrium	heart
4	chr1:56496200-56500800	Enhancers	Hela-S3	cervix
5	chr1:56497400-56501800	Weak transcription	Fetal Lung	lung
6	chr1:56498000-56502000	Enhancers	NHDF-Ad	bronchial
7	chr1:56498600-56499600	Enhancers	Placenta	Placenta
8	chr1:56499000-56499600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:56499000-56499800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:56499000-56501000	Enhancers	Ovary	ovary
11	chr1:56499200-56499600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:56499200-56499600	Enhancers	NHLF	lung
13	chr1:56499200-56499800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:56499200-56499800	Enhancers	HSMMtube	muscle
15	chr1:56499200-56500800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:56499200-56501000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:56499200-56501000	Enhancers	Osteobl	bone
18	chr1:56499400-56499600	Enhancers	Small Intestine	intestine
19	chr1:56499400-56500400	Weak transcription	Adipose Nuclei	Adipose
20	chr1:56499400-56500400	Weak transcription	Fetal Stomach	stomach
21	chr1:56499400-56500400	Weak transcription	Left Ventricle	heart
22	chr1:56499400-56500400	Weak transcription	Lung	lung
23	chr1:56499400-56500400	Weak transcription	Right Ventricle	heart
24	chr1:56499400-56501200	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links