Variant report

Variant	rs72906319
Chromosome Location	chr1:56397448-56397449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56385562..56386307-chr1:56396787..56397745,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10158676	1.00[EUR][1000 genomes]
rs10489775	1.00[EUR][1000 genomes]
rs10489778	1.00[EUR][1000 genomes]
rs10489779	1.00[EUR][1000 genomes]
rs12164621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13376471	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13376472	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1412214	1.00[EUR][1000 genomes]
rs17113002	1.00[EUR][1000 genomes]
rs17113022	1.00[EUR][1000 genomes]
rs17113255	1.00[EUR][1000 genomes]
rs17113279	1.00[EUR][1000 genomes]
rs17113283	1.00[EUR][1000 genomes]
rs17113285	1.00[EUR][1000 genomes]
rs17113287	1.00[EUR][1000 genomes]
rs17113288	1.00[EUR][1000 genomes]
rs17113296	1.00[EUR][1000 genomes]
rs17113300	1.00[EUR][1000 genomes]
rs17113308	1.00[EUR][1000 genomes]
rs17113309	1.00[EUR][1000 genomes]
rs17113315	1.00[EUR][1000 genomes]
rs60063936	1.00[EUR][1000 genomes]
rs6588579	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588606	1.00[EUR][1000 genomes]
rs6668822	1.00[EUR][1000 genomes]
rs6677923	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6689017	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6701560	1.00[EUR][1000 genomes]
rs72904444	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72904460	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72904464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72904496	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72904497	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904502	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910313	1.00[EUR][1000 genomes]
rs72910318	1.00[EUR][1000 genomes]
rs72910320	1.00[EUR][1000 genomes]
rs72910325	1.00[EUR][1000 genomes]
rs72910326	1.00[EUR][1000 genomes]
rs72910331	1.00[EUR][1000 genomes]
rs72910334	1.00[EUR][1000 genomes]
rs72910348	1.00[EUR][1000 genomes]
rs72910352	1.00[EUR][1000 genomes]
rs72910355	1.00[EUR][1000 genomes]
rs74072545	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7538626	1.00[EUR][1000 genomes]
rs881683	1.00[EUR][1000 genomes]
rs9803707	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9803781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9804038	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9970331	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56393400-56398000	Enhancers	Adipose Nuclei	Adipose
2	chr1:56393800-56398200	Enhancers	Fetal Muscle Leg	muscle
3	chr1:56395200-56398000	Enhancers	Ovary	ovary
4	chr1:56395200-56398400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56395400-56399000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:56395800-56397800	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr1:56396200-56398600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:56396400-56397600	Enhancers	Brain Germinal Matrix	brain
9	chr1:56396600-56397600	Enhancers	Fetal Stomach	stomach
10	chr1:56396600-56398000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:56396600-56398200	Enhancers	Colon Smooth Muscle	Colon
12	chr1:56396600-56398200	Enhancers	Fetal Heart	heart
13	chr1:56396600-56398400	Enhancers	Fetal Lung	lung
14	chr1:56396800-56397800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:56396800-56397800	Enhancers	Rectal Smooth Muscle	rectum
16	chr1:56396800-56398000	Enhancers	Osteobl	bone
17	chr1:56396800-56399000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr1:56397000-56397600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:56397000-56398000	Enhancers	HMEC	breast
20	chr1:56397000-56398000	Enhancers	HSMMtube	muscle
21	chr1:56397000-56398200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr1:56397200-56397600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:56397200-56397600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:56397200-56398000	Enhancers	NHEK	skin
25	chr1:56397200-56403400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr1:56397400-56398000	Enhancers	Sigmoid Colon	Sigmoid Colon

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