Variant report

Variant	rs72910313
Chromosome Location	chr1:56539084-56539085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56531749..56534195-chr1:56537938..56539674,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10158676	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489775	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489778	1.00[EUR][1000 genomes]
rs10489779	1.00[EUR][1000 genomes]
rs11206757	1.00[EUR][1000 genomes]
rs12044091	0.84[AFR][1000 genomes]
rs12164621	1.00[EUR][1000 genomes]
rs13376471	1.00[EUR][1000 genomes]
rs13376472	1.00[EUR][1000 genomes]
rs1412211	0.82[AFR][1000 genomes]
rs1412212	0.82[AFR][1000 genomes]
rs1412214	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113002	1.00[EUR][1000 genomes]
rs17113022	1.00[EUR][1000 genomes]
rs17113255	1.00[EUR][1000 genomes]
rs17113279	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113283	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113285	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113287	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113288	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113296	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113300	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113308	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113309	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113315	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56808525	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60063936	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588579	1.00[EUR][1000 genomes]
rs6588605	0.89[AMR][1000 genomes]
rs6588606	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6668822	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677923	1.00[EUR][1000 genomes]
rs6689017	1.00[EUR][1000 genomes]
rs6701560	1.00[EUR][1000 genomes]
rs72904460	1.00[EUR][1000 genomes]
rs72904464	1.00[EUR][1000 genomes]
rs72904496	1.00[EUR][1000 genomes]
rs72904497	1.00[EUR][1000 genomes]
rs72904502	1.00[EUR][1000 genomes]
rs72906319	1.00[EUR][1000 genomes]
rs72910318	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910320	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910325	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910326	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910334	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910349	0.81[AFR][1000 genomes]
rs72910352	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910355	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74072545	1.00[EUR][1000 genomes]
rs7538626	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544577	1.00[EUR][1000 genomes]
rs881683	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9803707	1.00[EUR][1000 genomes]
rs9803781	1.00[EUR][1000 genomes]
rs9804038	1.00[EUR][1000 genomes]
rs9970331	1.00[EUR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56518200-56540000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:56529200-56540400	Enhancers	NHDF-Ad	bronchial
3	chr1:56533000-56540600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56535200-56539400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:56535600-56539800	Weak transcription	HSMM	muscle
6	chr1:56536200-56539400	Weak transcription	Right Atrium	heart
7	chr1:56537200-56539800	Weak transcription	Pancreas	Pancrea
8	chr1:56537400-56540400	Enhancers	HUVEC	blood vessel
9	chr1:56537800-56540400	Enhancers	Aorta	Aorta
10	chr1:56537800-56540400	Enhancers	Fetal Muscle Leg	muscle
11	chr1:56537800-56540600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr1:56538000-56539800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr1:56538200-56540200	Enhancers	Stomach Smooth Muscle	stomach
14	chr1:56538200-56540400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:56538200-56543000	Enhancers	Placenta	Placenta
16	chr1:56538400-56540400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:56538400-56540400	Enhancers	Ovary	ovary
18	chr1:56538600-56540200	Enhancers	Left Ventricle	heart
19	chr1:56538600-56540400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:56538600-56540400	Enhancers	Psoas Muscle	Psoas
21	chr1:56538800-56540200	Enhancers	Osteobl	bone
22	chr1:56538800-56540400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:56538800-56540400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:56538800-56540400	Enhancers	Hela-S3	cervix
25	chr1:56538800-56540600	Enhancers	Adipose Nuclei	Adipose
26	chr1:56539000-56539800	Enhancers	Brain Substantia Nigra	brain
27	chr1:56539000-56540400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:56539000-56540400	Enhancers	Fetal Stomach	stomach
29	chr1:56539000-56540400	Enhancers	HSMMtube	muscle
30	chr1:56539000-56540400	Enhancers	NHLF	lung
31	chr1:56539000-56540600	Enhancers	Fetal Lung	lung

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