Variant report

Variant	rs6668822
Chromosome Location	chr1:56461251-56461252
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10158676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489778	1.00[EUR][1000 genomes]
rs10489779	1.00[EUR][1000 genomes]
rs11206757	1.00[EUR][1000 genomes]
rs12164621	1.00[EUR][1000 genomes]
rs13376471	1.00[EUR][1000 genomes]
rs13376472	1.00[EUR][1000 genomes]
rs1412214	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113002	1.00[EUR][1000 genomes]
rs17113022	1.00[EUR][1000 genomes]
rs17113255	1.00[EUR][1000 genomes]
rs17113279	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113283	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113285	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113287	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113288	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113296	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113300	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113308	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113309	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113315	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56808525	0.87[AMR][1000 genomes]
rs60063936	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588579	1.00[EUR][1000 genomes]
rs6588606	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677923	1.00[EUR][1000 genomes]
rs6689017	1.00[EUR][1000 genomes]
rs6701560	1.00[EUR][1000 genomes]
rs72904460	1.00[EUR][1000 genomes]
rs72904464	1.00[EUR][1000 genomes]
rs72904496	1.00[EUR][1000 genomes]
rs72904497	1.00[EUR][1000 genomes]
rs72904502	1.00[EUR][1000 genomes]
rs72906319	1.00[EUR][1000 genomes]
rs72910313	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910318	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910320	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910325	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910326	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910331	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910334	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910348	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910352	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910355	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74072545	1.00[EUR][1000 genomes]
rs7538626	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544577	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs881683	1.00[EUR][1000 genomes]
rs9803707	1.00[EUR][1000 genomes]
rs9803781	1.00[EUR][1000 genomes]
rs9804038	1.00[EUR][1000 genomes]
rs9970331	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56457600-56463200	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:56460200-56463200	Weak transcription	NHDF-Ad	bronchial
3	chr1:56461200-56461400	ZNF genes & repeats	Fetal Lung	lung

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