Variant report

Variant	rs10489778
Chromosome Location	chr1:56439705-56439706
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10158676	1.00[EUR][1000 genomes]
rs10489775	1.00[EUR][1000 genomes]
rs10489779	1.00[EUR][1000 genomes]
rs12164621	1.00[EUR][1000 genomes]
rs13376471	1.00[EUR][1000 genomes]
rs13376472	1.00[EUR][1000 genomes]
rs1412214	1.00[EUR][1000 genomes]
rs17113002	1.00[EUR][1000 genomes]
rs17113022	1.00[EUR][1000 genomes]
rs17113255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113279	1.00[EUR][1000 genomes]
rs17113283	1.00[EUR][1000 genomes]
rs17113285	1.00[EUR][1000 genomes]
rs17113287	1.00[EUR][1000 genomes]
rs17113288	1.00[EUR][1000 genomes]
rs17113296	1.00[EUR][1000 genomes]
rs17113300	1.00[EUR][1000 genomes]
rs17113308	1.00[EUR][1000 genomes]
rs17113309	1.00[EUR][1000 genomes]
rs17113315	1.00[EUR][1000 genomes]
rs4412634	1.00[MEX][hapmap]
rs60063936	1.00[EUR][1000 genomes]
rs6588579	1.00[EUR][1000 genomes]
rs6588606	1.00[EUR][1000 genomes]
rs6668822	1.00[EUR][1000 genomes]
rs6677923	1.00[EUR][1000 genomes]
rs6689017	1.00[EUR][1000 genomes]
rs6701560	1.00[EUR][1000 genomes]
rs72904460	1.00[EUR][1000 genomes]
rs72904464	1.00[EUR][1000 genomes]
rs72904496	1.00[EUR][1000 genomes]
rs72904497	1.00[EUR][1000 genomes]
rs72904502	1.00[EUR][1000 genomes]
rs72906319	1.00[EUR][1000 genomes]
rs72910313	1.00[EUR][1000 genomes]
rs72910318	1.00[EUR][1000 genomes]
rs72910320	1.00[EUR][1000 genomes]
rs72910325	1.00[EUR][1000 genomes]
rs72910326	1.00[EUR][1000 genomes]
rs72910331	1.00[EUR][1000 genomes]
rs72910334	1.00[EUR][1000 genomes]
rs72910348	1.00[EUR][1000 genomes]
rs72910352	1.00[EUR][1000 genomes]
rs72910355	1.00[EUR][1000 genomes]
rs74072545	1.00[EUR][1000 genomes]
rs7538626	1.00[EUR][1000 genomes]
rs7544577	1.00[EUR][1000 genomes]
rs881683	1.00[EUR][1000 genomes]
rs9803707	1.00[EUR][1000 genomes]
rs9803781	1.00[EUR][1000 genomes]
rs9804038	1.00[EUR][1000 genomes]
rs9970331	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56425800-56441000	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:56432200-56439800	Weak transcription	Osteobl	bone
3	chr1:56436400-56440000	Weak transcription	Hela-S3	cervix
4	chr1:56436600-56439800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:56436600-56439800	Weak transcription	Adipose Nuclei	Adipose
6	chr1:56437600-56441000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56438000-56439800	Enhancers	NHDF-Ad	bronchial
8	chr1:56438200-56441000	Weak transcription	Aorta	Aorta
9	chr1:56438200-56441600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:56439000-56440000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:56439000-56441400	Enhancers	NHLF	lung
12	chr1:56439200-56439800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr1:56439200-56440000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:56439200-56441400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:56439600-56440000	Enhancers	Fetal Lung	lung
16	chr1:56439600-56441200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:56439600-56441400	Enhancers	HSMM	muscle
18	chr1:56439600-56441600	Enhancers	HSMMtube	muscle

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