Variant report

Variant	rs72910320
Chromosome Location	chr1:56546479-56546480
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10158676	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489775	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489778	1.00[EUR][1000 genomes]
rs10489779	1.00[EUR][1000 genomes]
rs11206757	1.00[EUR][1000 genomes]
rs12044091	1.00[AFR][1000 genomes]
rs12164621	1.00[EUR][1000 genomes]
rs13376471	1.00[EUR][1000 genomes]
rs13376472	1.00[EUR][1000 genomes]
rs1412211	0.97[AFR][1000 genomes]
rs1412212	0.97[AFR][1000 genomes]
rs1412214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113022	1.00[EUR][1000 genomes]
rs17113255	1.00[EUR][1000 genomes]
rs17113279	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113283	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113285	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113287	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113288	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113296	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113300	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113308	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113309	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113315	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2110030	0.95[AFR][1000 genomes]
rs56808525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60063936	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588579	1.00[EUR][1000 genomes]
rs6588605	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6588606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6668822	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677923	1.00[EUR][1000 genomes]
rs6689017	1.00[EUR][1000 genomes]
rs6701560	1.00[EUR][1000 genomes]
rs72904460	1.00[EUR][1000 genomes]
rs72904464	1.00[EUR][1000 genomes]
rs72904496	1.00[EUR][1000 genomes]
rs72904497	1.00[EUR][1000 genomes]
rs72904502	1.00[EUR][1000 genomes]
rs72906319	1.00[EUR][1000 genomes]
rs72910313	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910331	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910332	0.82[AFR][1000 genomes]
rs72910334	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910348	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910352	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910355	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74072545	1.00[EUR][1000 genomes]
rs7538626	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544577	1.00[EUR][1000 genomes]
rs881683	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9803707	1.00[EUR][1000 genomes]
rs9803781	1.00[EUR][1000 genomes]
rs9804038	1.00[EUR][1000 genomes]
rs9970331	1.00[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56540200-56549600	Weak transcription	Left Ventricle	heart
2	chr1:56540400-56546800	Weak transcription	Ovary	ovary
3	chr1:56540400-56547000	Weak transcription	Right Atrium	heart
4	chr1:56543000-56550000	Weak transcription	Psoas Muscle	Psoas
5	chr1:56545000-56546600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:56545000-56546800	Enhancers	Hela-S3	cervix
7	chr1:56545000-56547200	Enhancers	HUVEC	blood vessel
8	chr1:56545600-56546600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:56545600-56546800	Enhancers	Colon Smooth Muscle	Colon
10	chr1:56545600-56547200	Enhancers	Fetal Stomach	stomach
11	chr1:56545800-56547000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:56545800-56547000	Enhancers	Osteobl	bone
13	chr1:56546000-56546600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:56546000-56546600	Enhancers	NHLF	lung
15	chr1:56546000-56546800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:56546200-56547200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:56546200-56548400	Flanking Active TSS	NHDF-Ad	bronchial
18	chr1:56546400-56546600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:56546400-56546800	Weak transcription	Adipose Nuclei	Adipose
20	chr1:56546400-56547000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:56546400-56547200	Enhancers	HSMM	muscle
22	chr1:56546400-56547400	Enhancers	Fetal Lung	lung

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