Variant report

Variant	rs12044091
Chromosome Location	chr1:56552638-56552639
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10888954	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206706	0.83[ASN][1000 genomes]
rs11206708	0.83[ASN][1000 genomes]
rs11799937	1.00[CEU][hapmap]
rs12022559	0.83[ASN][1000 genomes]
rs12023471	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024778	1.00[ASN][1000 genomes]
rs12025328	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026025	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12026754	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027471	0.83[ASN][1000 genomes]
rs12027507	0.83[ASN][1000 genomes]
rs12028993	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12031780	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12031810	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12033449	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12035632	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037566	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037900	0.88[ASN][1000 genomes]
rs12039145	0.83[ASN][1000 genomes]
rs12039731	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12040672	0.83[ASN][1000 genomes]
rs12042311	0.83[ASN][1000 genomes]
rs12042475	0.83[ASN][1000 genomes]
rs12044310	0.90[ASN][1000 genomes]
rs12044313	0.90[ASN][1000 genomes]
rs12045904	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12405362	0.83[ASN][1000 genomes]
rs12407240	0.83[ASN][1000 genomes]
rs1412211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1412212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1412214	0.95[AFR][1000 genomes]
rs17113308	0.90[AFR][1000 genomes]
rs17113309	0.90[AFR][1000 genomes]
rs17113315	0.97[AFR][1000 genomes]
rs2110030	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56808525	0.97[AFR][1000 genomes]
rs60063936	0.89[AFR][1000 genomes]
rs6588605	0.95[AFR][1000 genomes]
rs6588606	0.97[AFR][1000 genomes]
rs72910313	0.84[AFR][1000 genomes]
rs72910318	1.00[AFR][1000 genomes]
rs72910320	1.00[AFR][1000 genomes]
rs72910325	1.00[AFR][1000 genomes]
rs72910326	1.00[AFR][1000 genomes]
rs72910331	0.80[AFR][1000 genomes]
rs72910332	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910334	0.97[AFR][1000 genomes]
rs72910348	0.91[AFR][1000 genomes]
rs72910349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910352	0.95[AFR][1000 genomes]
rs72910355	0.95[AFR][1000 genomes]
rs7538626	0.97[AFR][1000 genomes]
rs881683	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56548800-56558600	Weak transcription	NHDF-Ad	bronchial
2	chr1:56552600-56553000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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