Variant report
| Variant | rs12044313 |
|---|---|
| Chromosome Location | chr1:56461528-56461529 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10888954 | 0.90[ASN][1000 genomes] |
| rs11206706 | 0.92[ASN][1000 genomes] |
| rs11206708 | 0.92[ASN][1000 genomes] |
| rs12022559 | 0.92[ASN][1000 genomes] |
| rs12023471 | 0.90[ASN][1000 genomes] |
| rs12024778 | 0.90[ASN][1000 genomes] |
| rs12025328 | 0.90[ASN][1000 genomes] |
| rs12026025 | 0.81[ASN][1000 genomes] |
| rs12026754 | 0.90[ASN][1000 genomes] |
| rs12027471 | 0.92[ASN][1000 genomes] |
| rs12027507 | 0.92[ASN][1000 genomes] |
| rs12028993 | 0.90[ASN][1000 genomes] |
| rs12031810 | 0.90[ASN][1000 genomes] |
| rs12032566 | 0.87[ASN][1000 genomes] |
| rs12033449 | 0.90[ASN][1000 genomes] |
| rs12035632 | 0.90[ASN][1000 genomes] |
| rs12037566 | 0.90[ASN][1000 genomes] |
| rs12039145 | 0.92[ASN][1000 genomes] |
| rs12040672 | 0.92[ASN][1000 genomes] |
| rs12042475 | 0.92[ASN][1000 genomes] |
| rs12044091 | 0.90[ASN][1000 genomes] |
| rs12044310 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12405362 | 0.92[ASN][1000 genomes] |
| rs12407240 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1412211 | 0.90[ASN][1000 genomes] |
| rs1412212 | 0.90[ASN][1000 genomes] |
| rs2110030 | 0.90[ASN][1000 genomes] |
| rs72910332 | 0.90[ASN][1000 genomes] |
| rs72910349 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv870513 | chr1:56407227-56493106 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1003385 | chr1:56430742-56468732 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:56457600-56463200 | Weak transcription | Colon Smooth Muscle | Colon |
| 2 | chr1:56460200-56463200 | Weak transcription | NHDF-Ad | bronchial |
