Variant report

Variant	rs6689017
Chromosome Location	chr1:56358428-56358429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56354852..56356556-chr1:56356929..56358473,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10158676	1.00[EUR][1000 genomes]
rs10489775	1.00[EUR][1000 genomes]
rs10489778	1.00[EUR][1000 genomes]
rs10489779	1.00[EUR][1000 genomes]
rs12164621	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376471	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376472	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1412214	1.00[EUR][1000 genomes]
rs17113002	1.00[EUR][1000 genomes]
rs17113022	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17113255	1.00[EUR][1000 genomes]
rs17113279	1.00[EUR][1000 genomes]
rs17113283	1.00[EUR][1000 genomes]
rs17113285	1.00[EUR][1000 genomes]
rs17113287	1.00[EUR][1000 genomes]
rs17113288	1.00[EUR][1000 genomes]
rs17113296	1.00[EUR][1000 genomes]
rs17113300	1.00[EUR][1000 genomes]
rs17113308	1.00[EUR][1000 genomes]
rs17113309	1.00[EUR][1000 genomes]
rs17113315	1.00[EUR][1000 genomes]
rs60063936	1.00[EUR][1000 genomes]
rs6588579	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588606	1.00[EUR][1000 genomes]
rs6668822	1.00[EUR][1000 genomes]
rs6677923	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701560	1.00[EUR][1000 genomes]
rs72904444	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904460	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904464	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904496	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72904497	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72904502	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72906319	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72910313	1.00[EUR][1000 genomes]
rs72910318	1.00[EUR][1000 genomes]
rs72910320	1.00[EUR][1000 genomes]
rs72910325	1.00[EUR][1000 genomes]
rs72910326	1.00[EUR][1000 genomes]
rs72910331	1.00[EUR][1000 genomes]
rs72910334	1.00[EUR][1000 genomes]
rs72910348	1.00[EUR][1000 genomes]
rs74072545	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7538626	1.00[EUR][1000 genomes]
rs881683	1.00[EUR][1000 genomes]
rs9803707	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9803781	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804038	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9970331	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56358000-56359600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:56358200-56358800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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