Variant report

Variant	rs72904496
Chromosome Location	chr1:56386381-56386382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56381262..56382928-chr1:56386333..56388137,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10158676	1.00[EUR][1000 genomes]
rs10489775	1.00[EUR][1000 genomes]
rs10489778	1.00[EUR][1000 genomes]
rs10489779	1.00[EUR][1000 genomes]
rs12164621	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13376471	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13376472	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1412214	1.00[EUR][1000 genomes]
rs17113002	1.00[EUR][1000 genomes]
rs17113022	1.00[EUR][1000 genomes]
rs17113255	1.00[EUR][1000 genomes]
rs17113279	1.00[EUR][1000 genomes]
rs17113283	1.00[EUR][1000 genomes]
rs17113285	1.00[EUR][1000 genomes]
rs17113287	1.00[EUR][1000 genomes]
rs17113288	1.00[EUR][1000 genomes]
rs17113296	1.00[EUR][1000 genomes]
rs17113300	1.00[EUR][1000 genomes]
rs17113308	1.00[EUR][1000 genomes]
rs17113309	1.00[EUR][1000 genomes]
rs17113315	1.00[EUR][1000 genomes]
rs60063936	1.00[EUR][1000 genomes]
rs6588579	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588606	1.00[EUR][1000 genomes]
rs6668822	1.00[EUR][1000 genomes]
rs6677923	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6689017	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6701560	1.00[EUR][1000 genomes]
rs72904444	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72904460	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72904464	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72904497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72904502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72906319	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72910313	1.00[EUR][1000 genomes]
rs72910318	1.00[EUR][1000 genomes]
rs72910320	1.00[EUR][1000 genomes]
rs72910325	1.00[EUR][1000 genomes]
rs72910326	1.00[EUR][1000 genomes]
rs72910331	1.00[EUR][1000 genomes]
rs72910334	1.00[EUR][1000 genomes]
rs72910348	1.00[EUR][1000 genomes]
rs72910352	1.00[EUR][1000 genomes]
rs72910355	1.00[EUR][1000 genomes]
rs74072545	1.00[EUR][1000 genomes]
rs7538626	1.00[EUR][1000 genomes]
rs881683	1.00[EUR][1000 genomes]
rs9803707	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9803781	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9804038	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9970331	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56381600-56386400	Weak transcription	Placenta	Placenta
2	chr1:56382600-56386400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:56382600-56393400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56382800-56392800	Weak transcription	Fetal Lung	lung
5	chr1:56383000-56393400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:56386200-56386800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56386200-56386800	Enhancers	Esophagus	oesophagus
8	chr1:56386200-56387600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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