Variant report

Variant	rs11506820
Chromosome Location	chr9:108171763-108171764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16924583	0.83[AMR][1000 genomes]
rs4387039	0.83[AMR][1000 genomes]
rs6479310	0.83[AMR][1000 genomes]
rs7026079	0.83[AMR][1000 genomes]
rs7040500	0.83[AMR][1000 genomes]
rs932005	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108146800-108177600	Weak transcription	Left Ventricle	heart
2	chr9:108155400-108172600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:108167000-108172600	Weak transcription	Brain Hippocampus Middle	brain
4	chr9:108167200-108173800	Weak transcription	Brain Substantia Nigra	brain
5	chr9:108167400-108174000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:108168400-108174000	Weak transcription	Fetal Heart	heart
7	chr9:108168800-108173600	Weak transcription	HepG2	liver
8	chr9:108171600-108172000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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