Variant report

Variant	rs16924583
Chromosome Location	chr9:108177849-108177850
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:107921703..107922601-chr9:108177458..108178261,2	MCF-7	breast:
2	chr9:107921257..107922704-chr9:108177309..108178719,12	MCF-7	breast:
3	chr9:108176485..108179164-chr9:108369802..108371532,2	K562	blood:
4	chr9:107950713..107951349-chr9:108177451..108178322,2	MCF-7	breast:
5	chr9:108006433..108008412-chr9:108176076..108179164,3	MCF-7	breast:
6	chr9:108007148..108008877-chr9:108174581..108177913,4	MCF-7	breast:
7	chr9:108006703..108008015-chr9:108177378..108178145,3	MCF-7	breast:
8	chr9:108005319..108006844-chr9:108176651..108179101,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10113900	0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs10114564	1.00[GIH][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs11506820	0.83[AMR][1000 genomes]
rs12115775	1.00[GIH][hapmap]
rs12335518	1.00[GIH][hapmap]
rs12338806	1.00[GIH][hapmap]
rs12343676	1.00[GIH][hapmap]
rs12348331	1.00[GIH][hapmap]
rs16924597	1.00[GIH][hapmap]
rs16924617	1.00[GIH][hapmap]
rs4387039	1.00[AMR][1000 genomes]
rs4394455	1.00[GIH][hapmap]
rs6479308	0.83[AMR][1000 genomes]
rs6479310	1.00[AMR][1000 genomes]
rs7025543	1.00[GIH][hapmap]
rs7026079	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs7027037	1.00[MKK][hapmap]
rs7040500	1.00[AMR][1000 genomes]
rs7866899	0.83[AMR][1000 genomes]
rs932005	1.00[AMR][1000 genomes]
rs9942851	0.81[YRI][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108175400-108179400	Enhancers	Liver	Liver
2	chr9:108175600-108178000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:108175600-108181200	Enhancers	HepG2	liver
4	chr9:108175800-108181800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:108176200-108181000	Weak transcription	Adipose Nuclei	Adipose
6	chr9:108176200-108188200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:108176400-108180800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:108176800-108178000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:108177000-108178000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:108177200-108178000	Enhancers	Brain Hippocampus Middle	brain
11	chr9:108177200-108178000	Enhancers	Fetal Intestine Small	intestine
12	chr9:108177200-108178000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:108177200-108178200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:108177200-108178400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr9:108177200-108178400	Enhancers	Brain Substantia Nigra	brain
16	chr9:108177400-108178000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr9:108177400-108178000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr9:108177600-108178000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr9:108177600-108178000	Enhancers	Primary B cells from peripheral blood	blood
20	chr9:108177600-108178000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr9:108177600-108178000	Enhancers	Colon Smooth Muscle	Colon
22	chr9:108177600-108178000	Enhancers	Fetal Muscle Trunk	muscle
23	chr9:108177600-108178000	Enhancers	Fetal Muscle Leg	muscle
24	chr9:108177600-108178000	Flanking Active TSS	Hela-S3	cervix
25	chr9:108177600-108178000	Enhancers	Osteobl	bone
26	chr9:108177600-108178200	Enhancers	Fetal Heart	heart
27	chr9:108177600-108178200	Enhancers	Fetal Intestine Large	intestine
28	chr9:108177600-108186400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:108177800-108178000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
30	chr9:108177800-108178000	Active TSS	Brain Angular Gyrus	brain
31	chr9:108177800-108178200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr9:108177800-108178200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr9:108177800-108178200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr9:108177800-108178200	Enhancers	Brain Anterior Caudate	brain
35	chr9:108177800-108178200	Enhancers	Dnd41	blood
36	chr9:108177800-108178800	Weak transcription	GM12878-XiMat	blood
37	chr9:108177800-108179200	Weak transcription	Fetal Brain Male	brain
38	chr9:108177800-108179400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:108177800-108179400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr9:108177800-108180800	Weak transcription	Fetal Lung	lung
41	chr9:108177800-108180800	Weak transcription	Stomach Mucosa	stomach
42	chr9:108177800-108181000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr9:108177800-108181000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr9:108177800-108181000	Weak transcription	A549	lung
45	chr9:108177800-108182200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr9:108177800-108194200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:108177800-108194200	Weak transcription	Rectal Mucosa Donor 29	rectum

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