Variant report

Variant	rs16924597
Chromosome Location	chr9:108181778-108181779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108181084..108183179-chr9:108184863..108187693,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10114564	1.00[GIH][hapmap]
rs12115775	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12335407	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335408	0.88[EUR][1000 genomes]
rs12335518	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12338806	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12343676	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12346049	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12348331	1.00[GIH][hapmap];0.82[MKK][hapmap]
rs13295239	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13297766	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13301941	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924583	1.00[GIH][hapmap]
rs16924617	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs16924620	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28425173	1.00[EUR][1000 genomes]
rs28848179	0.94[EUR][1000 genomes]
rs34310266	1.00[EUR][1000 genomes]
rs34412410	0.94[EUR][1000 genomes]
rs35754489	1.00[EUR][1000 genomes]
rs4394455	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6477441	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6477443	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6477444	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7025543	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7025836	0.82[MKK][hapmap]
rs7027252	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494531	0.94[EUR][1000 genomes]
rs71494532	0.94[EUR][1000 genomes]
rs7467335	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7855200	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108175800-108181800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:108176200-108188200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:108177600-108186400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:108177800-108182200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:108177800-108194200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:108177800-108194200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:108178000-108181800	Weak transcription	Fetal Intestine Small	intestine
8	chr9:108179200-108183200	Enhancers	Fetal Brain Male	brain
9	chr9:108179600-108184200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:108180000-108182200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:108180600-108182800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr9:108180600-108183400	Enhancers	Fetal Brain Female	brain
13	chr9:108180600-108184400	Enhancers	Brain Hippocampus Middle	brain
14	chr9:108180800-108181800	Enhancers	Fetal Lung	lung
15	chr9:108180800-108182200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr9:108180800-108182600	Enhancers	Brain Angular Gyrus	brain
17	chr9:108180800-108182800	Enhancers	Brain Substantia Nigra	brain
18	chr9:108181000-108182400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr9:108181000-108182600	Enhancers	Brain Cingulate Gyrus	brain
20	chr9:108181000-108182800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr9:108181000-108183000	Enhancers	Brain Anterior Caudate	brain
22	chr9:108181200-108181800	Weak transcription	Fetal Intestine Large	intestine
23	chr9:108181200-108181800	Flanking Active TSS	HepG2	liver
24	chr9:108181600-108182000	Enhancers	Liver	Liver
25	chr9:108181600-108182600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links