Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108181084..108183179-chr9:108184863..108187693,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12115775	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12335407	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12335408	0.88[EUR][1000 genomes]
rs12335518	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12338806	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12343676	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12346049	0.94[EUR][1000 genomes]
rs13295239	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13301941	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924597	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924617	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924620	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28425173	1.00[EUR][1000 genomes]
rs28848179	0.94[EUR][1000 genomes]
rs34310266	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34412410	0.94[EUR][1000 genomes]
rs35754489	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4394455	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6477441	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6477443	1.00[EUR][1000 genomes]
rs6477444	1.00[EUR][1000 genomes]
rs7025543	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7027252	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs71494531	0.94[EUR][1000 genomes]
rs71494532	0.94[EUR][1000 genomes]
rs7467335	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7855200	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108176200-108188200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:108177600-108186400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:108177800-108194200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:108177800-108194200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:108179200-108183200	Enhancers	Fetal Brain Male	brain
6	chr9:108179600-108184200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:108180600-108183400	Enhancers	Fetal Brain Female	brain
8	chr9:108180600-108184400	Enhancers	Brain Hippocampus Middle	brain
9	chr9:108181000-108183000	Enhancers	Brain Anterior Caudate	brain
10	chr9:108181800-108183000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:108181800-108184800	Enhancers	HepG2	liver
12	chr9:108182000-108183000	Flanking Active TSS	Liver	Liver
13	chr9:108182200-108184000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:108182600-108193800	Weak transcription	Brain Angular Gyrus	brain
15	chr9:108182600-108193800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:108182800-108184000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr9:108182800-108193600	Weak transcription	Brain Substantia Nigra	brain
18	chr9:108182800-108193800	Weak transcription	Brain Inferior Temporal Lobe	brain

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