Variant report

Variant	rs7027252
Chromosome Location	chr9:108189166-108189167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108172349..108174594-chr9:108188399..108190618,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12115775	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12335407	1.00[CEU][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335408	0.88[EUR][1000 genomes]
rs12335518	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12338806	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12343676	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12346049	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13295239	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13297766	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13301941	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924597	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924617	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924620	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28425173	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28848179	0.94[EUR][1000 genomes]
rs34310266	1.00[EUR][1000 genomes]
rs34412410	0.94[EUR][1000 genomes]
rs35754489	1.00[EUR][1000 genomes]
rs4394455	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6477441	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6477443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6477444	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7025543	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494531	0.94[EUR][1000 genomes]
rs71494532	0.94[EUR][1000 genomes]
rs7467335	1.00[CEU][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7855200	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108177800-108194200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:108177800-108194200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:108182600-108193800	Weak transcription	Brain Angular Gyrus	brain
4	chr9:108182600-108193800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:108182800-108193600	Weak transcription	Brain Substantia Nigra	brain
6	chr9:108182800-108193800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:108183000-108194000	Weak transcription	Brain Anterior Caudate	brain
8	chr9:108184400-108193600	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:108188800-108193600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:108189000-108194000	Weak transcription	Liver	Liver

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