Variant report

Variant	rs28848179
Chromosome Location	chr9:108168880-108168881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12115775	1.00[EUR][1000 genomes]
rs12335407	0.94[EUR][1000 genomes]
rs12335408	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12335518	0.94[EUR][1000 genomes]
rs12338806	0.94[EUR][1000 genomes]
rs12343676	0.94[EUR][1000 genomes]
rs12346049	1.00[EUR][1000 genomes]
rs13295239	0.94[EUR][1000 genomes]
rs13297766	0.94[EUR][1000 genomes]
rs13301941	0.94[EUR][1000 genomes]
rs16924597	0.94[EUR][1000 genomes]
rs16924617	0.94[EUR][1000 genomes]
rs16924620	0.94[EUR][1000 genomes]
rs28425173	0.94[EUR][1000 genomes]
rs34310266	0.94[EUR][1000 genomes]
rs34412410	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35754489	0.94[EUR][1000 genomes]
rs4394455	0.94[EUR][1000 genomes]
rs6477441	1.00[EUR][1000 genomes]
rs6477443	0.94[EUR][1000 genomes]
rs6477444	0.94[EUR][1000 genomes]
rs7025543	0.94[EUR][1000 genomes]
rs7027252	0.94[EUR][1000 genomes]
rs71494531	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494532	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7467335	0.94[EUR][1000 genomes]
rs7855200	1.00[EUR][1000 genomes]
rs7872853	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108146800-108177600	Weak transcription	Left Ventricle	heart
2	chr9:108155400-108172600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:108165600-108170000	Enhancers	Dnd41	blood
4	chr9:108166200-108169400	Weak transcription	Brain Anterior Caudate	brain
5	chr9:108166200-108171600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:108166600-108169000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr9:108167000-108172600	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:108167200-108169000	Enhancers	Fetal Thymus	thymus
9	chr9:108167200-108173800	Weak transcription	Brain Substantia Nigra	brain
10	chr9:108167400-108169000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:108167400-108174000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:108168400-108169000	Enhancers	Primary T cells from cord blood	blood
13	chr9:108168400-108169000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr9:108168400-108171600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:108168400-108174000	Weak transcription	Fetal Heart	heart
16	chr9:108168600-108169000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:108168600-108169000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:108168600-108169000	Enhancers	GM12878-XiMat	blood
19	chr9:108168800-108169000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:108168800-108169000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr9:108168800-108169000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
22	chr9:108168800-108173600	Weak transcription	HepG2	liver

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