Variant report

Variant	rs7025543
Chromosome Location	chr9:108194056-108194057
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10114564	1.00[GIH][hapmap]
rs10118989	1.00[TSI][hapmap]
rs11506819	1.00[TSI][hapmap]
rs12115775	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12335407	1.00[CEU][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335408	0.88[EUR][1000 genomes]
rs12335518	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12338806	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12343676	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12346049	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12348331	1.00[GIH][hapmap]
rs13285648	1.00[TSI][hapmap]
rs13295239	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13297766	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13301941	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924583	1.00[GIH][hapmap]
rs16924597	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924617	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16924620	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28425173	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28848179	0.94[EUR][1000 genomes]
rs34310266	1.00[EUR][1000 genomes]
rs34412410	0.94[EUR][1000 genomes]
rs35754489	1.00[EUR][1000 genomes]
rs4394455	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6477441	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6477443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6477444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7027252	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7034136	1.00[TSI][hapmap]
rs7048586	1.00[TSI][hapmap]
rs71494531	0.94[EUR][1000 genomes]
rs71494532	0.94[EUR][1000 genomes]
rs7467335	1.00[CEU][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7855200	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7856524	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108177800-108194200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:108177800-108194200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:108192600-108196600	Enhancers	Fetal Intestine Large	intestine
4	chr9:108193400-108195800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr9:108193400-108196600	Enhancers	Fetal Intestine Small	intestine
6	chr9:108193600-108194600	Enhancers	HepG2	liver
7	chr9:108193600-108194800	Enhancers	Brain Substantia Nigra	brain
8	chr9:108193600-108195200	Enhancers	Brain Hippocampus Middle	brain
9	chr9:108193600-108195200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr9:108193600-108195200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr9:108193600-108195800	Enhancers	Duodenum Mucosa	Duodenum
12	chr9:108193800-108194400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:108193800-108194400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:108193800-108194400	Enhancers	Fetal Muscle Leg	muscle
15	chr9:108193800-108194400	Enhancers	Left Ventricle	heart
16	chr9:108193800-108194400	Enhancers	Lung	lung
17	chr9:108193800-108194600	Weak transcription	Fetal Brain Male	brain
18	chr9:108193800-108194800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:108193800-108195000	Enhancers	Brain Angular Gyrus	brain
20	chr9:108193800-108195000	Genic enhancers	Brain Cingulate Gyrus	brain
21	chr9:108193800-108195000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr9:108194000-108194200	Enhancers	Brain Anterior Caudate	brain
23	chr9:108194000-108195000	Enhancers	Stomach Smooth Muscle	stomach
24	chr9:108194000-108195200	Enhancers	Colon Smooth Muscle	Colon
25	chr9:108194000-108196600	Enhancers	Liver	Liver

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