Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108196491..108199020-chr9:108207109..108209245,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12115775	0.94[EUR][1000 genomes]
rs12335407	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335408	0.88[EUR][1000 genomes]
rs12335518	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12338806	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12343676	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12346049	0.94[EUR][1000 genomes]
rs13295239	1.00[EUR][1000 genomes]
rs13297766	1.00[EUR][1000 genomes]
rs13301941	1.00[EUR][1000 genomes]
rs16924597	1.00[EUR][1000 genomes]
rs16924617	1.00[EUR][1000 genomes]
rs16924620	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28848179	0.94[EUR][1000 genomes]
rs34310266	1.00[EUR][1000 genomes]
rs34412410	0.94[EUR][1000 genomes]
rs35754489	1.00[EUR][1000 genomes]
rs4394455	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6477441	0.94[EUR][1000 genomes]
rs6477443	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6477444	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7025543	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7027252	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71494531	0.94[EUR][1000 genomes]
rs71494532	0.94[EUR][1000 genomes]
rs7467335	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7855200	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108194400-108200400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:108194400-108200600	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:108194800-108200400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:108194800-108203800	Weak transcription	Brain Anterior Caudate	brain
5	chr9:108195000-108199000	Weak transcription	HSMMtube	muscle
6	chr9:108195000-108200000	Weak transcription	Brain Angular Gyrus	brain
7	chr9:108195000-108200200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:108195000-108200200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:108195000-108200800	Weak transcription	Pancreas	Pancrea
10	chr9:108195200-108198600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:108195200-108198600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:108195200-108200400	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:108195200-108200400	Weak transcription	Fetal Kidney	kidney
14	chr9:108195800-108209800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:108196800-108199400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:108197800-108200600	Weak transcription	Brain Substantia Nigra	brain
17	chr9:108197800-108206800	Weak transcription	HepG2	liver
18	chr9:108198000-108198600	Weak transcription	Liver	Liver
19	chr9:108198000-108200000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr9:108198000-108200400	Weak transcription	Ovary	ovary

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