Variant report

Variant	rs13301941
Chromosome Location	chr9:108179492-108179493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12115775	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12335407	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12335408	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12335518	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12338806	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12343676	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12346049	0.94[EUR][1000 genomes]
rs13295239	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13297766	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924597	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924617	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924620	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28425173	1.00[EUR][1000 genomes]
rs28848179	0.94[EUR][1000 genomes]
rs34310266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34412410	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35754489	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4394455	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6477441	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6477443	1.00[EUR][1000 genomes]
rs6477444	1.00[EUR][1000 genomes]
rs7025543	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7027252	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs71494531	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71494532	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7467335	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7855200	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108175600-108181200	Enhancers	HepG2	liver
2	chr9:108175800-108181800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:108176200-108181000	Weak transcription	Adipose Nuclei	Adipose
4	chr9:108176200-108188200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:108176400-108180800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:108177600-108186400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:108177800-108180800	Weak transcription	Fetal Lung	lung
8	chr9:108177800-108180800	Weak transcription	Stomach Mucosa	stomach
9	chr9:108177800-108181000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:108177800-108181000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:108177800-108181000	Weak transcription	A549	lung
12	chr9:108177800-108182200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:108177800-108194200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:108177800-108194200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:108178000-108180800	Weak transcription	Brain Angular Gyrus	brain
16	chr9:108178000-108181000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr9:108178000-108181800	Weak transcription	Fetal Intestine Small	intestine
18	chr9:108178200-108180600	Weak transcription	Fetal Intestine Large	intestine
19	chr9:108178200-108181000	Weak transcription	Brain Anterior Caudate	brain
20	chr9:108178800-108179600	Flanking Active TSS	GM12878-XiMat	blood
21	chr9:108179000-108179600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr9:108179200-108179600	Strong transcription	Brain Substantia Nigra	brain
23	chr9:108179200-108183200	Enhancers	Fetal Brain Male	brain
24	chr9:108179400-108179600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr9:108179400-108179600	Enhancers	Fetal Thymus	thymus
26	chr9:108179400-108179800	Enhancers	Duodenum Mucosa	Duodenum
27	chr9:108179400-108180000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:108179400-108180000	Enhancers	Brain Hippocampus Middle	brain
29	chr9:108179400-108180400	Flanking Active TSS	Liver	Liver

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