Variant report

Variant	rs34310266
Chromosome Location	chr9:108201320-108201321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108191068..108193805-chr9:108199257..108201700,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12115775	0.94[EUR][1000 genomes]
rs12335407	1.00[EUR][1000 genomes]
rs12335408	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12335518	1.00[EUR][1000 genomes]
rs12338806	1.00[EUR][1000 genomes]
rs12343676	1.00[EUR][1000 genomes]
rs12346049	0.94[EUR][1000 genomes]
rs13295239	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13297766	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13301941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924597	1.00[EUR][1000 genomes]
rs16924617	1.00[EUR][1000 genomes]
rs16924620	1.00[EUR][1000 genomes]
rs28425173	1.00[EUR][1000 genomes]
rs28848179	0.94[EUR][1000 genomes]
rs34412410	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35754489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4394455	1.00[EUR][1000 genomes]
rs6477441	0.94[EUR][1000 genomes]
rs6477443	1.00[EUR][1000 genomes]
rs6477444	1.00[EUR][1000 genomes]
rs7025543	1.00[EUR][1000 genomes]
rs7027252	1.00[EUR][1000 genomes]
rs71494531	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71494532	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7467335	1.00[EUR][1000 genomes]
rs7855200	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1053973	chr9:108199177-108300186	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108194800-108203800	Weak transcription	Brain Anterior Caudate	brain
2	chr9:108195800-108209800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:108197800-108206800	Weak transcription	HepG2	liver
4	chr9:108199400-108203600	Weak transcription	Psoas Muscle	Psoas
5	chr9:108200000-108201600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:108200000-108202000	Enhancers	NH-A	brain
7	chr9:108200000-108202400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:108200200-108201400	Enhancers	Brain Cingulate Gyrus	brain
9	chr9:108200200-108201600	Flanking Active TSS	HSMMtube	muscle
10	chr9:108200400-108201400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:108200400-108201600	Enhancers	NHLF	lung
12	chr9:108200400-108201800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:108200600-108201600	Enhancers	Fetal Muscle Leg	muscle
14	chr9:108200600-108201800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:108200600-108202400	Enhancers	Fetal Heart	heart
16	chr9:108200600-108203800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr9:108200800-108201400	Strong transcription	Brain Hippocampus Middle	brain
18	chr9:108200800-108201400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr9:108200800-108201400	Enhancers	NHDF-Ad	bronchial
20	chr9:108201000-108202000	Enhancers	K562	blood
21	chr9:108201000-108202200	Weak transcription	Ovary	ovary
22	chr9:108201000-108203400	Weak transcription	Right Atrium	heart
23	chr9:108201000-108203800	Weak transcription	Brain Angular Gyrus	brain
24	chr9:108201000-108207600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:108201000-108209600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr9:108201200-108201400	Enhancers	HSMM	muscle
27	chr9:108201200-108202000	Weak transcription	Brain Substantia Nigra	brain
28	chr9:108201200-108202200	Enhancers	Liver	Liver
29	chr9:108201200-108202400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr9:108201200-108204600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:108201200-108205000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr9:108201200-108205600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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