Variant report

Variant	rs6477441
Chromosome Location	chr9:108174727-108174728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108007148..108008877-chr9:108174581..108177913,4	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12115775	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335407	1.00[CEU][hapmap];0.81[YRI][hapmap];0.94[EUR][1000 genomes]
rs12335408	0.82[EUR][1000 genomes]
rs12335518	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12338806	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12343676	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12346049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13295239	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs13297766	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs13301941	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16924597	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16924617	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16924620	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28425173	0.94[EUR][1000 genomes]
rs28848179	1.00[EUR][1000 genomes]
rs34310266	0.94[EUR][1000 genomes]
rs34412410	1.00[EUR][1000 genomes]
rs35754489	0.94[EUR][1000 genomes]
rs4394455	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6477443	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6477444	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7024356	0.88[AFR][1000 genomes]
rs7025543	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7027252	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71494531	1.00[EUR][1000 genomes]
rs71494532	1.00[EUR][1000 genomes]
rs7467335	1.00[CEU][hapmap];0.81[YRI][hapmap];0.94[EUR][1000 genomes]
rs7855200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7872853	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108146800-108177600	Weak transcription	Left Ventricle	heart
2	chr9:108173600-108175400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:108174200-108175400	Weak transcription	Brain Substantia Nigra	brain
4	chr9:108174200-108175600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:108174200-108175600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:108174200-108177600	Weak transcription	Fetal Heart	heart
7	chr9:108174400-108174800	Weak transcription	Adipose Nuclei	Adipose
8	chr9:108174400-108175600	Weak transcription	HepG2	liver

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