Variant report

Variant	rs10114564
Chromosome Location	chr9:108165868-108165869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108006964..108008816-chr9:108165166..108168105,2	MCF-7	breast:
2	chr9:108154477..108157251-chr9:108163904..108166512,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10113900	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12115775	1.00[GIH][hapmap]
rs12335518	1.00[GIH][hapmap]
rs12338806	1.00[GIH][hapmap]
rs12343676	1.00[GIH][hapmap]
rs12348331	1.00[GIH][hapmap]
rs16924583	1.00[GIH][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs16924597	1.00[GIH][hapmap]
rs16924617	1.00[GIH][hapmap]
rs4387039	0.83[AMR][1000 genomes]
rs4394455	1.00[GIH][hapmap]
rs6479310	0.83[AMR][1000 genomes]
rs7025543	1.00[GIH][hapmap]
rs7026079	0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7040500	0.83[AMR][1000 genomes]
rs932005	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108125000-108166800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:108146800-108177600	Weak transcription	Left Ventricle	heart
3	chr9:108148400-108168000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:108152600-108166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:108155400-108172600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:108159800-108166000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:108163200-108166000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr9:108163200-108166000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:108163200-108168400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:108163800-108167400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:108164200-108166400	Enhancers	Brain Hippocampus Middle	brain
12	chr9:108164200-108167200	Enhancers	Brain Substantia Nigra	brain
13	chr9:108164400-108167800	Weak transcription	Fetal Heart	heart
14	chr9:108164600-108167800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:108165200-108166400	Enhancers	Brain Cingulate Gyrus	brain
16	chr9:108165400-108167800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr9:108165600-108166000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr9:108165600-108166000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr9:108165600-108166200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr9:108165600-108166200	Enhancers	Brain Anterior Caudate	brain
21	chr9:108165600-108166400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:108165600-108166600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr9:108165600-108166800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:108165600-108167200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:108165600-108170000	Enhancers	Dnd41	blood
26	chr9:108165800-108166000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr9:108165800-108166000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
28	chr9:108165800-108166200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr9:108165800-108166200	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr9:108165800-108166200	Enhancers	Brain Angular Gyrus	brain
31	chr9:108165800-108166200	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr9:108165800-108166200	Enhancers	Fetal Brain Male	brain
33	chr9:108165800-108166400	Enhancers	Stomach Mucosa	stomach
34	chr9:108165800-108166600	Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr9:108165800-108166600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr9:108165800-108167000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
37	chr9:108165800-108167200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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