Variant report

Variant	rs4387039
Chromosome Location	chr9:108087370-108087371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108080682..108083667-chr9:108087313..108089895,3	MCF-7	breast:
2	chr9:108086313..108088804-chr9:108089116..108090830,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10113900	0.83[AMR][1000 genomes]
rs10114564	0.83[AMR][1000 genomes]
rs11506820	0.83[AMR][1000 genomes]
rs12378850	1.00[CHD][hapmap]
rs16924583	1.00[AMR][1000 genomes]
rs6479308	0.83[AMR][1000 genomes]
rs6479310	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7026079	1.00[AMR][1000 genomes]
rs7040500	1.00[AMR][1000 genomes]
rs7858401	1.00[CHD][hapmap]
rs7863918	0.85[AFR][1000 genomes]
rs7866899	0.83[AMR][1000 genomes]
rs7867378	0.93[LWK][hapmap];0.90[MKK][hapmap];0.85[AFR][1000 genomes]
rs932005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9942851	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893689	chr9:107978563-108130606	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108054600-108090800	Weak transcription	Psoas Muscle	Psoas
2	chr9:108055600-108151200	Weak transcription	Esophagus	oesophagus
3	chr9:108062200-108091400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:108062200-108091800	Weak transcription	Aorta	Aorta
5	chr9:108062200-108098800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr9:108062400-108098800	Weak transcription	Spleen	Spleen
7	chr9:108062400-108104600	Weak transcription	Right Ventricle	heart
8	chr9:108062600-108090800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:108062600-108090800	Weak transcription	Fetal Thymus	thymus
10	chr9:108062600-108091000	Weak transcription	Adipose Nuclei	Adipose
11	chr9:108062600-108091600	Weak transcription	NHDF-Ad	bronchial
12	chr9:108062600-108098600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:108062600-108098800	Weak transcription	Left Ventricle	heart
14	chr9:108062600-108098800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:108062800-108098400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr9:108062800-108098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:108063200-108087400	Weak transcription	Fetal Brain Female	brain
18	chr9:108063800-108087400	Weak transcription	Fetal Lung	lung
19	chr9:108066200-108098600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:108068800-108098600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr9:108069000-108104000	Weak transcription	Fetal Heart	heart
22	chr9:108070400-108091800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:108070400-108093400	Weak transcription	Gastric	stomach
24	chr9:108070400-108094600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:108071400-108090400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:108071600-108099000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr9:108071800-108097800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:108072200-108090200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr9:108072200-108090400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:108072400-108094200	Weak transcription	HSMM	muscle
31	chr9:108072400-108098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:108072600-108091400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr9:108072600-108094800	Weak transcription	HSMMtube	muscle
34	chr9:108076000-108096200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:108076600-108089800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:108077200-108090800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr9:108078400-108101800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:108079600-108098800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:108080000-108098800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr9:108080400-108097800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr9:108081000-108123000	Weak transcription	Primary B cells from cord blood	blood
42	chr9:108081600-108090600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:108081600-108091600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:108081600-108096400	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr9:108081800-108090400	Weak transcription	Brain Angular Gyrus	brain
46	chr9:108081800-108091800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:108082000-108090000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr9:108082000-108090600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:108082000-108091800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr9:108082000-108097600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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