Variant report

Variant	rs7866899
Chromosome Location	chr9:108134713-108134714
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10991642	0.81[AFR][1000 genomes]
rs16924583	0.83[AMR][1000 genomes]
rs4387039	0.83[AMR][1000 genomes]
rs6479310	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7026079	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7040500	0.83[AMR][1000 genomes]
rs932005	0.83[AMR][1000 genomes]
rs9942851	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108055600-108151200	Weak transcription	Esophagus	oesophagus
2	chr9:108091600-108150400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:108092000-108148000	Weak transcription	Psoas Muscle	Psoas
4	chr9:108093200-108149800	Weak transcription	HUVEC	blood vessel
5	chr9:108096200-108164200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:108097600-108147000	Weak transcription	HMEC	breast
7	chr9:108100200-108136200	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:108100200-108149600	Weak transcription	Pancreas	Pancrea
9	chr9:108104800-108147600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:108105000-108149600	Weak transcription	Right Ventricle	heart
11	chr9:108105000-108151200	Weak transcription	Gastric	stomach
12	chr9:108105000-108154800	Weak transcription	Small Intestine	intestine
13	chr9:108105200-108149800	Weak transcription	NHDF-Ad	bronchial
14	chr9:108117000-108146400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:108117400-108147400	Weak transcription	Spleen	Spleen
16	chr9:108118200-108147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:108118400-108139800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:108118600-108147600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr9:108120200-108146200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:108121400-108139400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:108121600-108157000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:108121800-108137000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr9:108121800-108137000	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:108121800-108148600	Weak transcription	A549	lung
25	chr9:108122000-108137400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:108122400-108148200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:108122600-108137400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:108122600-108137400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr9:108122600-108153400	Weak transcription	Stomach Mucosa	stomach
30	chr9:108123000-108134800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:108123600-108154400	Weak transcription	Colonic Mucosa	Colon
32	chr9:108123800-108136800	Weak transcription	HSMM	muscle
33	chr9:108123800-108147600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr9:108124200-108137400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr9:108124200-108147000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr9:108124200-108147600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:108124400-108137000	Weak transcription	Fetal Brain Female	brain
38	chr9:108124400-108137200	Weak transcription	Lung	lung
39	chr9:108124400-108137400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:108124400-108147400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr9:108124400-108151000	Weak transcription	Fetal Brain Male	brain
42	chr9:108124600-108151800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr9:108125000-108166800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr9:108125200-108136800	Weak transcription	HepG2	liver
45	chr9:108125200-108147000	Weak transcription	GM12878-XiMat	blood
46	chr9:108125400-108136200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:108125400-108137000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:108125400-108147000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr9:108125400-108147600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr9:108125400-108149800	Weak transcription	HSMMtube	muscle

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