Variant report

Variant	rs11512476
Chromosome Location	chr11:121399277-121399278
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10892752	0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11218301	0.90[CHB][hapmap]
rs11218312	0.89[ASN][1000 genomes]
rs11218319	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11218326	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs11218335	0.94[ASN][1000 genomes]
rs11518396	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12360983	0.89[ASN][1000 genomes]
rs12361125	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12795657	0.89[ASN][1000 genomes]
rs12796201	0.89[ASN][1000 genomes]
rs2009383	0.85[ASN][1000 genomes]
rs2276346	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs3933403	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs4935775	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7105365	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7109029	0.89[ASN][1000 genomes]
rs7481208	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2566564	chr11:121397826-121399297	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
2	chr11:121385600-121418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:121391400-121437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:121392400-121414800	Weak transcription	Stomach Mucosa	stomach
5	chr11:121393400-121414200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:121393600-121415400	Weak transcription	Colonic Mucosa	Colon
7	chr11:121395000-121403000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:121395000-121404000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:121395200-121403000	Weak transcription	Thymus	Thymus
10	chr11:121395200-121414000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:121395200-121414400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:121395200-121434800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:121395400-121400200	Weak transcription	Small Intestine	intestine
14	chr11:121395400-121403000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:121395400-121404000	Weak transcription	Brain Angular Gyrus	brain
16	chr11:121395400-121404600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:121395400-121424600	Weak transcription	Gastric	stomach
18	chr11:121396200-121403000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:121396400-121405000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:121396400-121414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:121396400-121445000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:121396600-121399400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:121396600-121399400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:121396600-121399400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:121396600-121399600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:121396600-121399600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:121396600-121400000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:121396600-121400000	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr11:121396600-121400000	Weak transcription	Fetal Intestine Large	intestine
30	chr11:121396600-121400200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:121396600-121400600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:121396600-121400800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:121396600-121400800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr11:121396600-121400800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:121396600-121401000	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:121396600-121402400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:121396600-121404600	Weak transcription	Brain Anterior Caudate	brain
38	chr11:121396600-121405400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:121396600-121405600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:121396600-121405800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:121396600-121414200	Weak transcription	Pancreas	Pancrea
42	chr11:121396600-121437600	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:121396800-121399400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:121396800-121399800	Weak transcription	Primary T cells from cord blood	blood
45	chr11:121396800-121399800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:121396800-121400000	Weak transcription	Primary B cells from cord blood	blood
47	chr11:121396800-121400000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr11:121396800-121400000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:121396800-121405000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:121396800-121414000	Weak transcription	Esophagus	oesophagus

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