Variant report

Variant	rs12361125
Chromosome Location	chr11:121364140-121364141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121358992..121360735-chr11:121362875..121365300,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10892752	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11218301	0.84[AMR][1000 genomes]
rs11218304	0.81[AMR][1000 genomes]
rs11218312	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11218319	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11218326	0.83[ASN][1000 genomes]
rs11512476	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11518396	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12360983	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12795657	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12796043	0.82[AMR][1000 genomes]
rs12796201	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2009383	1.00[ASN][1000 genomes]
rs2276346	0.83[ASN][1000 genomes]
rs3933403	0.83[ASN][1000 genomes]
rs4935775	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7105365	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7109029	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7481208	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121349800-121365000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:121349800-121393000	Weak transcription	Colonic Mucosa	Colon
3	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
4	chr11:121350200-121367800	Weak transcription	Fetal Kidney	kidney
5	chr11:121350400-121393200	Weak transcription	Gastric	stomach
6	chr11:121350800-121368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:121351200-121366600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:121351400-121384600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:121352800-121377600	Strong transcription	HepG2	liver
10	chr11:121353600-121364400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:121353600-121367200	Weak transcription	Fetal Lung	lung
12	chr11:121353600-121377000	Weak transcription	Pancreas	Pancrea
13	chr11:121353800-121365000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:121353800-121365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:121353800-121374200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:121354200-121365000	Weak transcription	HMEC	breast
17	chr11:121354400-121364600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:121354400-121365000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:121354600-121365000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:121355000-121364200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:121355200-121364400	Strong transcription	Primary T cells from cord blood	blood
22	chr11:121355400-121364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:121355600-121365000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:121356000-121365000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:121358400-121364400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:121358800-121366800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:121358800-121367400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:121359000-121364800	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr11:121359000-121365800	Weak transcription	Brain Angular Gyrus	brain
30	chr11:121359000-121367800	Weak transcription	Brain Substantia Nigra	brain
31	chr11:121359200-121365000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:121359200-121365000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:121359200-121365200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:121359200-121365200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:121359200-121367600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:121359200-121367600	Weak transcription	Ovary	ovary
37	chr11:121359200-121367800	Weak transcription	Aorta	Aorta
38	chr11:121359200-121369800	Weak transcription	Left Ventricle	heart
39	chr11:121359200-121384200	Weak transcription	Fetal Stomach	stomach
40	chr11:121359400-121367400	Weak transcription	Brain Anterior Caudate	brain
41	chr11:121359400-121367600	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:121359600-121365000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:121359600-121367800	Weak transcription	Spleen	Spleen
44	chr11:121359800-121365000	Weak transcription	Stomach Mucosa	stomach
45	chr11:121359800-121365600	Weak transcription	Thymus	Thymus
46	chr11:121359800-121377000	Weak transcription	Esophagus	oesophagus
47	chr11:121360200-121365000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:121360600-121364800	Genic enhancers	GM12878-XiMat	blood
49	chr11:121360600-121367000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr11:121360600-121368400	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links