Variant report

Variant	rs11518396
Chromosome Location	chr11:121377796-121377797
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121376745..121379548-chr11:121384857..121386768,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10892752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218301	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11218304	0.83[AMR][1000 genomes]
rs11218312	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218319	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218326	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11218335	0.83[ASN][1000 genomes]
rs11512476	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12360983	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361125	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12795657	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796043	0.84[AMR][1000 genomes]
rs12796201	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2009383	0.96[ASN][1000 genomes]
rs2276346	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs3933403	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4935775	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7105365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109029	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121349800-121393000	Weak transcription	Colonic Mucosa	Colon
2	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
3	chr11:121350400-121393200	Weak transcription	Gastric	stomach
4	chr11:121351400-121384600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:121359200-121384200	Weak transcription	Fetal Stomach	stomach
6	chr11:121360800-121384400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:121365800-121392600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:121368000-121378800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:121368400-121395800	Weak transcription	Fetal Kidney	kidney
10	chr11:121368600-121387000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:121368800-121378600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:121369000-121396800	Weak transcription	Ovary	ovary
13	chr11:121369200-121378600	Weak transcription	Brain Anterior Caudate	brain
14	chr11:121369200-121378800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:121369200-121379000	Weak transcription	Brain Angular Gyrus	brain
16	chr11:121369400-121391000	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:121369800-121383000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:121370000-121378600	Weak transcription	Brain Substantia Nigra	brain
19	chr11:121371000-121378600	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:121371200-121379000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:121371200-121383600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:121371200-121384000	Weak transcription	Thymus	Thymus
23	chr11:121371400-121378800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:121371600-121378600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:121371600-121384000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:121371800-121383600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:121372800-121378600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:121373400-121383600	Weak transcription	Fetal Thymus	thymus
29	chr11:121375200-121390200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr11:121375400-121378000	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr11:121375400-121379000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:121375400-121391000	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:121375800-121378600	Weak transcription	Liver	Liver
34	chr11:121375800-121383600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:121376200-121379200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:121376200-121379200	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr11:121376400-121378400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
38	chr11:121376400-121378600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr11:121376600-121379000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:121376800-121378400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:121376800-121378600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr11:121376800-121378600	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr11:121376800-121379400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
44	chr11:121377000-121378400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:121377000-121378600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:121377000-121390400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr11:121377200-121378600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr11:121377200-121379200	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr11:121377200-121384000	Weak transcription	Fetal Lung	lung
50	chr11:121377400-121377800	Weak transcription	Small Intestine	intestine

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